Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq47 114 2e-20 seq37 114 2e-20 seq17 104 3e-17 seq425 89.7 8e-13 >seq47 Length=978588 Score = 114 bits (126), Expect = 2e-20 Identities = 111/140 (79%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 18180 CTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttt 18239 |||||||||||||||| | ||| ||||| ||||| | || ||||| | || | ||||| Sbjct 561881 CTTCATCTCTGGATATGAGTTCATTACTGAACGTAAGACCAGGCATGAGCCCACGTTTTT 561822 Query 18240 ttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC-GCACGCGAAC 18298 | ||||| ||||||| |||||||||| ||||||||| || || ||||| ||| || || Sbjct 561821 TCAGCCAGAATATCGCAGCGAAACTACCAGAAAAGAAAATCCCTTCAACAGCA-GCAAAG 561763 Query 18299 GCTATTAATCTTTCAGCAAA 18318 || || | ||||||||| || Sbjct 561762 GCAATCACTCTTTCAGCGAA 561743 >seq37 Length=1171872 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||||||||| | || || ||||||| ||||| |||||| | || || || | || Sbjct 188891 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATTACACTGGAGGTTGAGGCATC 188950 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||| || ||| ||| || |||||||||||||| || || ||||| || Sbjct 188951 TGACACCATCGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGTATCCCACCAGATCA 189010 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||| | ||||||||| || | || ||| |||||| | || ||||| || Sbjct 189011 ACAGCGTTTGATCTTTGCCGGTAAACAATTGGAGGATGGAAGAACTCTTTCCGATTACAA 189070 Query 156002 TAT 156004 ||| Sbjct 189071 TAT 189073 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || ||| | || ||||| || || || | ||||| |||| ||| Sbjct 189120 ATGCAGATATTCGTAAAGACACTTACAGGAAAGACGATCACCCTCGAAGTTGAAGCCTCT 189179 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| || ||||| || ||||||||||| || ||||| || Sbjct 189180 GACACAATTGAAAATGTCAAAGCCAAGATACAGGACAAAGAAGGCATTCCACCAGACCAG 189239 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | || ||||| || | || ||| |||||| | || || || ||| Sbjct 189240 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCGGACTACAAT 189299 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || || ||||| || Sbjct 189300 ATCCAGAAAGAGTCCACTCTCCATTTGGT 189328 Score = 89.7 bits (98), Expect = 8e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 155865 TTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAA 155924 || |||||||| | |||||||| ||| ||| || || || || || || ||||| Sbjct 188478 TTGGAAGTCGAGGCTTCTGATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAG 188537 Query 155925 GGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGA 155984 || || |||||||| || ||| | | || | || ||||||||||| || ||| |||| Sbjct 188538 GGAATTCCTCCAGACCAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAGGATGGCAGA 188597 Query 155985 ACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 ||| | |||||||| || || || ||| || |||| ||||| || || Sbjct 188598 ACTCTTTCAGATTACAACAT-TCAAAAGGAATCGACTCTTCACTTGGT 188644 Score = 89.7 bits (98), Expect = 8e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||||||||| | || || ||||||| ||||| || || | || ||||| | ||| Sbjct 188663 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGGCTTC 188722 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||| || || || || || || ||||| || || |||||||| || Sbjct 188723 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 188782 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | | || | || ||||| || | || ||| |||||| | |||||||| || Sbjct 188783 GCAACGTCTTATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCAGATTACAA 188842 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 ||| || ||| || | || ||||| || || Sbjct 188843 TAT-TCAAAAGGAATCTACTCTTCACTTGGT 188872 >seq17 Length=1605837 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| ||||| | |||||| |||| || || || || || |||| || || | | Sbjct 84450 AAAATGCAGATATTCGTGAAAACACTGACGGGCAAGACCATCACCCTAGAGGTTGAGGCT 84391 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| |||| ||||| || |||||| || || || || || || || ||||| Sbjct 84390 TCGGATACTATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGAC 84331 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || |||||||| | || || || ||||| || || | ||| | || |||||| Sbjct 84330 CAGCAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTAT 84271 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||||| || ||| | || |||||||| || Sbjct 84270 AATATCCAGAAGGAGTCTACCCTTCATTTGGT 84239 >seq425 Length=33725 Score = 89.7 bits (98), Expect = 8e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| ||||||| | || || ||||| || || | || || || | | Sbjct 29924 AACATGCAGATCTTTGTTAAAACCCTAACGGGGAAAACCATCACCCTCGAGGTAGAGGCT 29865 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || ||| || ||| ||||| || || || || || || || ||||| Sbjct 29864 TCCGACACAATCGAAAATGTCAAAGCCAAAATCCAGGACAAGGAGGGAATTCCCCCAGAC 29805 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| || |||| | || |||||||||||||||||| | ||| | || ||||| Sbjct 29804 CAACAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGACGCACTCTCTCTGATTAC 29745 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || || | || ||||| || || | |||||| | || |||| Sbjct 29744 AACATTCAGAAGGAATCAACACTTCACTTGGTACTGAGATTACGTGGTGGTG 29693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731862467367200