Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq41 105 2e-17 seq1 104 7e-17 >seq41 Length=1096805 Score = 105 bits (116), Expect = 2e-17 Identities = 202/294 (69%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||||| ||||| | |||||| || || || || ||| || ||||| ||| Sbjct 846940 TCCATAGCTTTGATCAAACGTCTCTGAATGTATCCTGTCTCAGCTGTCTTGACAGCAGTA 846999 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| |||| || ||||| || || || | | ||||| | || | Sbjct 847000 TCAATGAGACCCTCACGTCCTCCCATTGCGTGAAAATAAAA---TTCCGATGGTGTCAAA 847056 Query 302695 CCA---ATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 ||| | | | || |||||||||| || | | ||| || || |||| |||| || Sbjct 847057 CCAGCGAGATAAGAATTCTCAACGAATCCTCTGGACTCTGGACCATAGTCGTCCTTGATA 847116 Query 302752 AAGTGTGGCAGGGTCC-TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 |||||||| || || | | |||| | | || |||| || | || || || || ||||| Sbjct 847117 AAGTGTGGAAGTGTTCGTTTTCTGAAA-CCAAATGGAATTCTTTTACCCTCGACATTCTG 847175 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 |||||||| || | ||| | ||| || ||||| | | |||||||||||| Sbjct 847176 CTGTCCCACACAAGCAATAACCTGAGAGATATTGATGTTGGAGCCCTTGGAGCC 847229 >seq1 Length=5503185 Score = 104 bits (114), Expect = 7e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| |||||| || |||||||||||||| || || || |||| || ||| Sbjct 1887242 ATGGTCATACGAGAGGGAATGGCGTGGGGATTGATGATAATATCCGGCGTCAGGCCTTCA 1887183 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 || ||| |||||||||| | || || || ||||| || ||||| ||||| || Sbjct 1887182 CAAGAGAATGGCATATCCTCCT-GTCTGTACTGAATTCCACACGTACCCTTCTGTCCATG 1887124 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 | || ||||||||| ||||| |||| | ||||| | | ||||| |||||| Sbjct 1887123 CCTCGAGGCGAACTTATCCCCAATCTGAGGAATCCTCACACTCCTTACGCGAATCTTACA 1887064 Query 252024 GAAGTTGTAACCATCACCGTT 252044 ||| ||||| || || | ||| Sbjct 1887063 GAATTTGTACCCCTCGCTGTT 1887043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471797950315154