Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq19 170 2e-37 seq37 91.5 1e-13 >seq19 Length=1567206 Score = 170 bits (188), Expect = 2e-37 Identities = 264/377 (70%), Gaps = 0/377 (0%) Strand=Plus/Minus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATG 34314 || |||| || ||||| |||||||||||| |||| | ||| ||||| || | Sbjct 1419204 CCATGATGGCCACATGCCTTGCAGCCCTGAGAGATGGTTCCCTTCTTAGCACTGACCAGC 1419145 Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 ||||||||||| || || ||||| | |||||||| || |||| | ||||||||||| Sbjct 1419144 AGCTCAGTCTCTGGATTATCACACGCTGGACACAAAACGTACTTTCTTATGAAACCATCC 1419085 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 | || ||||||| ||| | || || || || ||||| ||||| ||||| || ||| Sbjct 1419084 AACAAATCCTGTAGTTTAGTTGCCTCATGTGATCCATTGACAATGAAACGTTCATTCTTG 1419025 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494 |||||| ||||||| ||||||| || || || || | || ||||| || | || Sbjct 1419024 AAATCGAATAGCGTTTGTGCGCCCAATTCACATCCAAAAAATTTGGTCGGATAGGTTGCG 1418965 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || | |||| ||||| || | || ||||||||| || || || || || || || Sbjct 1418964 GGCCTGCCAATAGCCTTTGCCACGTCCACCATGTTGACAATAACTGTTTTTATTCCATTT 1418905 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 || || || || || || || || || ||||| || || || ||||| || || | Sbjct 1418904 CCTTTACCCTCAACTTTAGCCTGTATACGAGGCATCTTATAACGATAGAATGCATCACTC 1418845 Query 34615 ACATTGCGGTTAACGTT 34631 || ||||| || ||||| Sbjct 1418844 ACGTTGCGATTCACGTT 1418828 >seq37 Length=1171872 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||||||||| || || ||| | || ||||||||||| ||| | || ||| || Sbjct 188663 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGGCTTC 188722 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || || ||||| |||||||| || | || || || Sbjct 188723 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 188782 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | ||||| | || |||||||| ||||||||| ||||| | | |||||||| Sbjct 188783 GCAACGTCTTATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCAGATTACAA 188842 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| |||||||| | ||| |||| || | || || || |||| Sbjct 188843 TATTCAAAAGGAATCTACTCTTCACTTGGTCCTACGTCTTCGTGGTGGAA 188892 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||||||||| || || ||| | || |||||||||||||| | || ||| | Sbjct 188891 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATTACACTGGAGGTTGAGGCATC 188950 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | || ||| |||||| || |||||||| | || ||||| Sbjct 188951 TGACACCATCGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGTATCCCACCAGATCA 189010 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | ||| |||||||| ||||||||| ||||| | | |||||||| Sbjct 189011 ACAGCGTTTGATCTTTGCCGGTAAACAATTGGAGGATGGAAGAACTCTTTCCGATTACAA 189070 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||||||||||| || Sbjct 189071 TATTCAAAAAGAATCCAC 189088 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||| ||| | || || || ||||| || | ||| ||| | Sbjct 189347 AATGCAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACACTTGAAGTAGAGGCCTC 189406 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || || ||||| || || || ||| | || ||||| Sbjct 189407 TGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCA 189466 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | || |||||||| |||||||||| |||||| | | || ||||| Sbjct 189467 GCAACGTTTGATCTTCGCTGGTAAACAACTGGAGGATGGCAGAACTCTCTCAGACTACAA 189526 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||||||||||| || | ||| |||| Sbjct 189527 CATTCAAAAAGAATCGACCCTTCACTTGGT 189556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412836357169706