Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq113 113 4e-20 seq37 105 7e-18 seq109 102 8e-17 >seq113 Length=346302 Score = 113 bits (124), Expect = 4e-20 Identities = 297/444 (67%), Gaps = 12/444 (3%) Strand=Plus/Plus Query 151009 GGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGC 151068 ||||||||| ||| ||| ||||| || || || || |||| | | ||| | Sbjct 256916 GGCCTCGAGGGCACCATAATACAGGGTCTCGAAGATCTGGATATTGAGTTTCTGGGCCTC 256975 Query 151069 ATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTAT 151128 || ||| || | || |||| || | ||||||||| |||| ||| |||| || || Sbjct 256976 ATTGCTGTCGAATGGATAACGCATCAGTAGAAATGCATCTGCCAGACCCTGAACTCCAAT 257035 Query 151129 GCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCG 151188 || ||||||||||| | ||| || || | |||| || || ||||| ||||| Sbjct 257036 TCCCATGGGACGATGTCTCATGTTGGAGACTCTTGCCTCCTCGATTGGGTAATAATTGAC 257095 Query 151189 ATCAATAATTTTATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAA-TAGTTGAA 151247 ||| |||| | | | | | | | | || |||||| || || | || | ||| || Sbjct 257096 ATCGATAACTCTGTCGAGATTTCTTGCGACGATTTTGACGACTGTCTTCAGCTTGTT-AA 257154 Query 151248 AATCAAAAGTATCATT-ATTG-----ATATATTTATTGACGGCAATCGACGCTAGATTAC 151301 | | |||| | || | || | | | ||||| |||||||| || | ||| | Sbjct 257155 AGTTGTAAGTCTTTTTCACTGGGTCCACGAACATGTTGACTGCAATCGAGGCCAAATTGC 257214 Query 151302 ATACGGCAGTTTCGTCGGGCGCGCAA-TATTGTACTATTTCCGCACACAAATTGCTGCAT 151360 | || ||| ||| ||||| || | | || | || || || | |||||| ||||||||| Sbjct 257215 AAACAGCAACTTCATCGGG-GCTCGAGTACTCGACGATCTCAGTACACAAGTTGCTGCAT 257273 Query 151361 TTTATCAATCCGCAATTACTT-TGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACAT 151419 |||||| ||| ||| | ||| |||||| ||| | ||||| ||||||||||| | ||| Sbjct 257274 TTTATCGTTCC-CAAGTTCTTCTGATTGGATTTTCTATTGCATGCGTCCTTGTACAGCAT 257332 Query 151420 GTACGGTGTGCCGGTTTCGGCTTG 151443 ||| || || || || ||| |||| Sbjct 257333 GTAGGGAGTTCCAGTCTCGACTTG 257356 >seq37 Length=1171872 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||||||||| | ||| | ||| | || | || ||||||||||| || ||||||||| Sbjct 189119 GCCTCCTCGAAGACGGAGAACGAGGTGGAGGGTGGATTCTTTTTGAATATTGTAATCGGA 189060 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || || || || | ||||||||| ||| |||||| ||| || ||||| || || Sbjct 189059 AAGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTGGTGG 189000 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || |||||||| || ||| || ||| | | ||| | ||||| | | || || Sbjct 188999 GATACCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCGATGGTGTCAGATGCCTCAAC 188940 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || ||||| |||| || ||||||||||||||||| Sbjct 188939 CTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188892 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 137196 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 137255 ||| | ||| ||||| | || || ||||| || || ||||| || | || || Sbjct 189335 ACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGAAAGAGTTCTTCC 189276 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 || || | |||||||||||| |||||| ||| ||||| || || || ||||||||||| Sbjct 189275 ATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGAATGCCTTCTTT 189216 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| || || ||| | | ||| | ||||| | || ||| ||||| | || | Sbjct 189215 GTCCTGTATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAACTTCGAGGGTGAT 189156 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| || || | ||| ||||||||||| ||||| Sbjct 189155 CGTCTTTCCTGTAAGTGTCTTTACGAATATCTGCAT 189120 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| | ||| | ||| || |||| || ||||||||||| |||||||| || Sbjct 189574 CCACCTCTGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAG 189515 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || |||||||||||||| |||||| |||||||||||| ||||| Sbjct 189514 AGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGG 189455 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || || || || || || | | ||| | || || | || |||||| Sbjct 189454 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTACT 189395 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| || |||| || || || || || ||||| Sbjct 189394 TCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAATCTGCAT 189348 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| |||||||| ||||| || |||||||| Sbjct 188890 CCACCACGAAGACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAA 188831 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || | |||||||||||| |||| ||||||||||| || ||||| Sbjct 188830 AGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGA 188771 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| || || || | | ||| | ||||| | | || || Sbjct 188770 ATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACC 188711 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || ||||| |||| || ||||||||||||||||| Sbjct 188710 TCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188664 >seq109 Length=386716 Score = 102 bits (112), Expect = 8e-17 Identities = 127/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 151277 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAA-TATTGTAC 151335 || || |||||||| || | ||| || || ||| |||| ||||| || | | || | || Sbjct 265631 TTAACTGCAATCGAGGCCAAATTGCAAACAGCAATTTCATCGGG-GCTCGAGTACTCCAC 265573 Query 151336 TATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTT-TGATTGCTTTTGC 151394 || || | ||||| ||||||||||||||| ||| ||| | ||| |||||| ||| | Sbjct 265572 GATCTCAGTGCACAAGTTGCTGCATTTTATCGTTCC-CAAGTTCTTCTGATTGGATTTCC 265514 Query 151395 GGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTG 151443 ||||||| ||||| ||||| | |||||| || || || || ||| |||| Sbjct 265513 GGTTGCATGCGTCTTTGTACAGCATGTAGGGGGTCCCAGTCTCGACTTG 265465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488537636714400