Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq37 172 1e-37 seq17 147 4e-30 seq112 132 9e-26 >seq37 Length=1171872 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| ||||| | ||| || || |||||||| || ||||| ||||| || Sbjct 189118 CCTCCTCGAAGACGGAGAACGAGGTGGAGGGTGGATTCTTTTTGAATATTGTAATCGGAA 189059 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || || || | |||||| || |||||||| | | ||||||||||| || Sbjct 189058 AGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 188999 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||||||||| ||||| |||||||| || || ||| | || || Sbjct 188998 ATACCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCGATGGTGTCAGATGCCTCAACC 188939 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || || ||||| |||| |||||||| ||||| |||||| Sbjct 188938 TCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCATT 188891 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| ||||| ||||| || || |||||||| || || || || || || Sbjct 189574 CCACCTCTGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAG 189515 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || || || |||||||| ||||| ||||| | | ||| ||||| ||||| Sbjct 189514 AGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGG 189455 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||| || || ||||||||||| |||||| | |||||| Sbjct 189454 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTACT 189395 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || |||| ||||| ||||| ||||||||| Sbjct 189394 TCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAATCTGCATT 189347 Score = 167 bits (184), Expect = 5e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| ||||||||||| || || ||||| ||||| || ||| |||| || Sbjct 188879 ACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAAAGAGTTCTTCC 188820 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | |||||| ||||| ||||| || | ||| || |||||||| ||||| || || Sbjct 188819 ATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTT 188760 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || ||||||||||| || ||| || || || |||| || || Sbjct 188759 GTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACCTCCAGGGTGAT 188700 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| |||| |||||||| ||||| |||||| Sbjct 188699 GGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCATT 188663 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| ||||| || || ||||| || |||||||| ||||| || || || Sbjct 189346 CCACCCCTGAGACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGAA 189287 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || || || | |||||| ||||| ||||| | | || || ||||| || Sbjct 189286 AGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGA 189227 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| ||||| ||||||||||| || ||| | ||| ||| Sbjct 189226 ATGCCTTCTTTGTCCTGTATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAACT 189167 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || |||||||| ||||| | |||||||| ||||||||||| Sbjct 189166 TCGAGGGTGATCGTCTTTCCTGTAAGTGTCTTTACGAATATCTGCAT 189120 Score = 134 bits (148), Expect = 3e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| ||||| ||||| || || || || ||||| || ||| |||| || Sbjct 188651 ACGTAGAACCAAGTGAAGAGTCGATTCCTTTTGAATGTTGTAATCTGAAAGAGTTCTGCC 188592 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || ||||| ||||| || | ||| || |||||||| ||||| || || Sbjct 188591 ATCCTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTT 188532 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAA 82768 || || ||||| || || ||||||||||| |||||| || || |||||||| Sbjct 188531 GTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCAGAAGCCTCGACTTCCAA 188478 >seq17 Length=1605837 Score = 147 bits (162), Expect = 4e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || || || || ||||| || ||||| |||||||||||||| ||| | | ||| Sbjct 84233 CGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAGAAAGAGTGCGTCCG 84292 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||||||||| ||||| | ||| || || ||||| || ||||| ||||| Sbjct 84293 TCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTG 84352 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || || || || || ||||| ||||| || || || || | || || Sbjct 84353 TCCTGGATTTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAACCTCTAGGGTGATG 84412 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||||||| |||| || || || |||||||||||| || Sbjct 84413 GTCTTGCCCGTCAGTGTTTTCACGAATATCTGCATTTTT 84451 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||||||| ||||| ||||| ||||| || || |||||||| || | | || Sbjct 82963 ACGGAGGACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCC 83022 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || ||||||||||| ||||| | ||| || || ||||| || || || ||||| Sbjct 83023 GTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTT 83082 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || || || || || ||||| || || || || || || || | || || Sbjct 83083 GTCCTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGAT 83142 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| | ||||| || || |||||||| Sbjct 83143 GGTTTTCCCTGTGAGAGTCTTGACGAAGATCTGCAT 83178 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||||||| ||||| ||||| ||||| || || |||||||| || | | || Sbjct 83320 ACGGAGGACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCC 83379 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || ||||||||||| ||||| | ||| || || ||||| || || || ||||| Sbjct 83380 GTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTT 83439 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || || || || || ||||| || || || || || || || | || || Sbjct 83440 GTCCTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGAT 83499 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| | ||||| || || |||||||| Sbjct 83500 GGTTTTCCCTGTGAGAGTCTTGACGAAGATCTGCAT 83535 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || ||||| || ||||| || || |||||||| ||| | | ||| Sbjct 83549 CGAAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCG 83608 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||||||||| ||||| | ||| || || ||||| || ||||| || || Sbjct 83609 TCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCTTTG 83668 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || || || |||||||| || || || | || || || | || || Sbjct 83669 TCCTGGATTTTAGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACCTCAAGGGTGATG 83728 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| | ||||| || || |||||||| Sbjct 83729 GTTTTCCCTGTGAGGGTCTTGACGAAGATCTGCAT 83763 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || || || || ||||| || ||||| ||||| |||||||| ||| | | ||| Sbjct 83777 CGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGTCCG 83836 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||||||||| || || | ||| || || ||||| || ||||| ||||| Sbjct 83837 TCCTCCAGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTG 83896 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || || || || || || ||||| || || | || || || | || || Sbjct 83897 TCCTGGATTTTAGCCTTGACGTTCTCAATAGTGTCTGACGCCTCGACCTCAAGGGTAATG 83956 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| | ||||| || || |||||||| Sbjct 83957 GTTTTCCCTGTGAGAGTCTTGACGAAGATCTGCAT 83991 >seq112 Length=360945 Score = 132 bits (146), Expect = 9e-26 Identities = 316/474 (67%), Gaps = 4/474 (1%) Strand=Plus/Minus Query 198154 CGTTTATAGATGAAATAATTATAAGAAGAGAACTGTCGGATAATTTTTGTTACTATAATA 198213 ||||||| || || ||| | || || ||| || |||||||| ||||| || ||| Sbjct 302459 CGTTTATGGAGGAGGCAATCGTCAGGAGGGAATTGAGCGATAATTTCTGTTATTACAATG 302400 Query 198214 AACATTACGATAGCGTACAGTCTACTCACGCATGGGCTAGAAGAACATTAGAAGATCACA 198273 | ||||||||| | || | | | || ||||||| | ||| | || | ||||| Sbjct 302399 AGAATTACGATAAGATCGAGGGCAGTAATGCGTGGGCTATACAAACCCTGGACGCTCACA 302340 Query 198274 TTAATGATCCTAGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCGGAAACACATG 198333 || ||| ||| ||| || || | | || || |||| | | | || || | Sbjct 302339 GGAAAGATAAAAGAGAGTGGATTTACACACTAGAAGAATTCGAGACTTCCCAGACCCACG 302280 Query 198334 ACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTT 198393 | || ||||||||| | || | ||| || | ||||| |||||||| ||| | || Sbjct 302279 AGGACCTCTGGAATGCAGCCCAGAATCAGTTGGTGAGAGAGGGAAAAATTCATGGATTCA 302220 Query 198394 TAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGA 198453 | || ||||||||||||||||| || || || |||| ||||||| || || || | | Sbjct 302219 TGAGGATGTACTGGGCTAAAAAAATTCTCGAGTGGAGCCGAACACCAGAGGATGCCCT-A 302161 Query 198454 GTTATAGT--ATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATA 198511 | | || |||||||| || | | |||| | || || | ||||| || || || Sbjct 302160 G-CCTGGTCAATCTATCTCAATGACAGGTACAGCATGGATGGAAGAGATCCCAATGGTTA 302102 Query 198512 CGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTAT 198571 || || ||||||||||| || || ||| | || |||| || |||||||| | || Sbjct 302101 TGTTGGATGTATGTGGTCAATCTGTGGAATTCACGATCAAGGATGGAAAGAGCGTGAGAT 302042 Query 198572 ATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGT 198625 |||||| || || | || ||||| || | || | | | | |||||| ||||| Sbjct 302041 ATTTGGAAAAATTCGTTACATGAACTACAAAGGATGTGAAAGAAAATTCGATGT 301988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981814091993238