Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq112 120 5e-22 >seq112 Length=360945 Score = 120 bits (132), Expect = 5e-22 Identities = 297/447 (66%), Gaps = 4/447 (1%) Strand=Plus/Minus Query 182837 CGTTTATAGATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAATA 182896 ||||||| || || ||| || || || ||| | |||||||| ||||| || ||| Sbjct 302459 CGTTTATGGAGGAGGCAATCGTCAGGAGGGAATTGAGCGATAATTTCTGTTATTACAATG 302400 Query 182897 AACATTACGATAGTGTTCAGTCTACTCACGCATGGGCTAGAAGAACATTAGAAGATCACG 182956 | ||||||||| | || | | | || ||||||| | ||| | || | |||| Sbjct 302399 AGAATTACGATAAGATCGAGGGCAGTAATGCGTGGGCTATACAAACCCTGGACGCTCACA 302340 Query 182957 TTAATGATCCTAGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATG 183016 || ||| ||| ||| || || | | || || |||| | | | || || | Sbjct 302339 GGAAAGATAAAAGAGAGTGGATTTACACACTAGAAGAATTCGAGACTTCCCAGACCCACG 302280 Query 183017 ACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTT 183076 | || ||||||||| | || | ||| || ||||||| |||||||| ||| | || Sbjct 302279 AGGACCTCTGGAATGCAGCCCAGAATCAGTTGGTGAGAGAGGGAAAAATTCATGGATTCA 302220 Query 183077 TACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGA 183136 | | ||||||||||||||||| || || || |||| |||| || || ||||| | | Sbjct 302219 TGAGGATGTACTGGGCTAAAAAAATTCTCGAGTGGAGCCGAACACCAGAGGATGCCCT-A 302161 Query 183137 GTTATAGT--ATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATA 183194 | | || |||||| | || | | |||| | || || | ||||| || || || Sbjct 302160 G-CCTGGTCAATCTATCTCAATGACAGGTACAGCATGGATGGAAGAGATCCCAATGGTTA 302102 Query 183195 CGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTAT 183254 || || ||||||||||| || || ||| | |||||| || |||||||| | || Sbjct 302101 TGTTGGATGTATGTGGTCAATCTGTGGAATTCACGATCAAGGATGGAAAGAGCGTGAGAT 302042 Query 183255 ATTTGGAAAGATAAGATATATGAATTA 183281 ||||||||| || | || ||||| || Sbjct 302041 ATTTGGAAAAATTCGTTACATGAACTA 302015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903399433069120