Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq109 125 2e-23 seq113 107 5e-18 >seq109 Length=386716 Score = 125 bits (138), Expect = 2e-23 Identities = 329/495 (66%), Gaps = 9/495 (2%) Strand=Plus/Plus Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || |||| || | ||| ||||| || ||| | | || | ||| |||| ||| || Sbjct 265072 AATGGTGTATCCAATGGGCTTGTACCCATGCTTCGTGTTTACAATAACACAGCACGTTAC 265131 Query 110727 GTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 || |||| ||||| || | | | ||| ||||||| || |||||||| || ||||| Sbjct 265132 GTTGATCAGGGTGGAAACAAACGTCCTGGCGCATTTGCCATTTATCTCGAGCCCTGGCAC 265191 Query 110784 TCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCA 110843 | || || ||||| | | || || || || |||| || ||| | ||||| Sbjct 265192 GCTGACATCTTTGATGTTCTCGATCTCAAGAAGAACACAGGAAAGGAGGAATATAGAGCG 265251 Query 110844 CGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAAT 110903 ||||| | || || ||| | |||||| | ||| ||||||||||||| || | | || Sbjct 265252 CGTGAGCTGTTCTACGCACTCTGGATTCCTGATCTATTCATGAAACGAGTCCTGGCGGAT 265311 Query 110904 GGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAA 110963 || |||||| ||| ||||| || || | ||| || || | ||| | || || Sbjct 265312 GGTATGTGGAGTCTGATGTGCCCCCACGAGTGTCCAGGCCTTTGTGACTCTTGGGGTGAA 265371 Query 110964 GAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTC--GCAAACAAATTC 111021 |||||||| | || |||| |||||| || || | |||| ||||| || || | Sbjct 265372 GAGTTTGAGAATCTCTACGTAAAATACGAGAACG-AGGCTCGTTTCAAGC-GTCAGGTGA 265429 Query 111022 CAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATA 111081 |||| || || ||| ||| ||| |||||||| || ||||| || || || | Sbjct 265430 AGGCTCGTGATCTCTGGACTGCAATTCTTATGTCACAAGTCGAGACTGGGACCCCCTACA 265489 Query 111082 TTTTGTATAAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAG 111140 | |||| ||||| ||| || || ||||| ||||| | ||| || ||||| || || Sbjct 265490 TGCTGTACAAAGACGCAT-GCAACCGGAAATCCAATCAGAAGAACTTGGGAACGATAAAA 265548 Query 111141 TCTAGTAATTTGTGC 111155 | || || |||||| Sbjct 265549 TGCAGCAACTTGTGC 265563 >seq113 Length=346302 Score = 107 bits (118), Expect = 5e-18 Identities = 316/480 (66%), Gaps = 9/480 (2%) Strand=Plus/Minus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 ||| ||||| || ||| | | || | ||| |||| ||| ||||| |||| ||||| Sbjct 257735 TGGGCTTGTACCCATGCTTCGTGTTTACAATAACACAGCACGTTATGTTGATCAGGGTGG 257676 Query 110741 TAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 || | | | || ||||||| || |||||||| || ||||| | || ||||| || Sbjct 257675 AAACAAACGTCCTGGAGCATTTGCCATTTATCTCGAGCCCTGGCACGCTGACATATTCGA 257616 Query 110798 ATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTA 110857 | | || || ||||| |||| || ||| | |||||||||| | ||||| Sbjct 257615 TGTTCTCGATCTCAAGAAAAACACAGGAAAAGAGGAATATCGAGCACGTGAACTTTTTTA 257556 Query 110858 TGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCT 110917 ||| | ||||| | |||||||||||||||||||||| | | | ||||| ||| Sbjct 257555 CGCACTCTGGATCCCGGATTTATTCATGAAACGTGTTCTGGCGGACGATGTGTGGAGTCT 257496 Query 110918 TATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCT 110977 ||||| || || | ||| || |||| ||| | || | || || || | || Sbjct 257495 GATGTGCCCCCACGAATGTCCAGGCCTATGTGACACCTGGGGTGAGGAATTCGAGAAGCT 257436 Query 110978 TTACGAAAAATATGAAAAAGAAGGCAAGTTTC--GCAAACAAATTCCAGCTCAAGAACTT 111035 ||| | | || || || |||| ||||| || || | ||||| || || Sbjct 257435 CTACACACAGTACGAGGGAG-AGGCCCGTTTCAAGC-GTCAGGTGAAAGCTCGTGAGCTC 257378 Query 111036 TGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA- 111094 ||| ||| ||| |||||||| || ||||||||||| || || |||| || || Sbjct 257377 TGGACTGCAATTCTTATGTCACAAGTCGAGACTGGAACTCCCTACATGCTGTACAAGGAC 257318 Query 111095 TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||| ||| | ||||| ||||| | ||| || ||||| || || | || || ||||| Sbjct 257317 GCAT-GCAATAGAAAATCCAATCAGAAGAACTTGGGAACGATAAAATGCAGCAACTTGTG 257259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186796955307362