Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq37 116 2e-21 seq17 105 4e-18 >seq37 Length=1171872 Score = 116 bits (128), Expect = 2e-21 Identities = 172/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| | |||||||| |||||| |||||| || || Sbjct 189358 AAAATCTGCATTCCACCCCTGAGACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATA 189299 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || || || | | | || ||||||||||| || || || |||||||||||| Sbjct 189298 TTGTAGTCCGAAAGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGC 189239 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | ||||||||||| || || | || |||| || | ||||| Sbjct 189238 TGGTCTGGTGGAATGCCTTCTTTGTCCTGTATCTT-GGCTTTGACATTTTCAATTGTGTC 189180 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||| || || | |||||||| || ||||| | || ||||| || |||||||| Sbjct 189179 AGAGGCTTCAACTTCGAGGGTGATCGTCTTTCCTGTAAGTGTCTTTACGAATATCTGCAT 189120 Score = 114 bits (126), Expect = 8e-21 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| || ||||||||||| || || | | | || ||||||||||| |||||||| Sbjct 189082 TCTTTTTGAATATTGTAATCGGAAAGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAG 189023 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||||||||| |||||| | || | ||||||||| || ||| || | || ||||| Sbjct 189022 ATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTT-AGCTTTAACATT 188964 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||| || || || || | || || ||||| || || | || ||||| Sbjct 188963 TTCGATGGTGTCAGATGCCTCAACCTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTAC 188904 Query 33738 AAAGATCTGCAT 33749 || || ||||| Sbjct 188903 GAATATTTGCAT 188892 >seq17 Length=1605837 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| ||||| ||| || || ||||||||||| ||||||||||| | || ||| Sbjct 84011 ACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGACCATCTTCC 84070 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| ||||| || || ||||| | |||||| ||| | || | || || ||||| Sbjct 84071 AATTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 84130 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | |||||| | || || |||| || || ||||| Sbjct 84131 ATTTT-AGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACCTCAAGGGTAATGGTTTT 84189 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| | || || || ||||||||||| Sbjct 84190 CCCTGTGAGGGTCTTGACGAAGATCTGCAT 84219 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || || || |||||| || || || ||||||||||| |||||||||||| |||| ||| Sbjct 82970 ACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCC 83029 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||||| || || ||||| | |||||| ||| | || | || || ||||| Sbjct 83030 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 83089 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | || | || | |||||| | || || |||| ||||| ||||| Sbjct 83090 ATTTT-AGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTT 83148 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| | || || || ||||||||||| Sbjct 83149 CCCTGTGAGAGTCTTGACGAAGATCTGCAT 83178 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || || || |||||| || || || ||||||||||| |||||||||||| |||| ||| Sbjct 83327 ACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGTCCGTCCTCC 83386 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||||| || || ||||| | |||||| ||| | || | || || ||||| Sbjct 83387 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGG 83446 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | || | || | |||||| | || || |||| ||||| ||||| Sbjct 83447 ATTTT-AGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGTGATGGTTTT 83505 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| | || || || ||||||||||| Sbjct 83506 CCCTGTGAGAGTCTTGACGAAGATCTGCAT 83535 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||| || || ||||||||||| || || |||||| |||| ||| Sbjct 83555 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCC 83614 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||||| || || ||||| | |||||| ||| | || | || |||||||| Sbjct 83615 AGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTGG 83674 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | |||||| | || || |||| ||||| ||||| Sbjct 83675 ATTTT-AGCCTTGACATTTTCGATGGTGTCTGACGCCTCGACCTCAAGGGTGATGGTTTT 83733 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| | || || || ||||||||||| Sbjct 83734 CCCTGTGAGGGTCTTGACGAAGATCTGCAT 83763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328699825664640