Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq37 113 1e-19 seq17 105 2e-17 >seq37 Length=1171872 Score = 113 bits (124), Expect = 1e-19 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || || |||||||| |||||||| | ||||| ||| |||||| Sbjct 189123 CAGATATTCGTAAAGACACTTACAGGAAAGACGATCACCCTCGAAGTTGAAGCCTCTGAC 189182 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| || ||| || || |||||||| ||| || ||| || Sbjct 189183 ACAATTGAAAATGTCAAAGCCAA-GATACAGGACAAAGAAGGCATTCCACCAGACCAGCA 189241 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | |||||||| || || || ||||| |||||||| ||| | | || ||||| | Sbjct 189242 GCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCGGACTACAATAT 189301 Query 206352 CCAGAAAGAGTCTACTCTTCA 206372 |||||||||||| ||||| || Sbjct 189302 CCAGAAAGAGTCCACTCTCCA 189322 Score = 107 bits (118), Expect = 5e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| |||| || || ||||||||| | ||| Sbjct 188679 AAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGGCTTCTGACACCATTGAAAAT 188738 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| |||||| || ||| ||| | ||||||||| Sbjct 188739 GTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCAGCAACGTCTTATCTTC 188798 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||| |||||||| ||| | | |||||||| | || || || ||| Sbjct 188799 GCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCAGATTACAATATTCAAAAGGAATCT 188858 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 188859 ACTCTTCAC 188867 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| || || |||| || || |||||||| ||||| Sbjct 188907 AAGACTCTGACTGGCAAAACCATTACACTGGAGGTTGAGGCATCTGACACCATCGAAAAT 188966 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 || ||||| || ||||||||| |||||||| || || || |||| || || || Sbjct 188967 GTTAAAGCTAA-GATTCAAGATAAAGAAGGTATCCCACCAGA---TCAACAGCGTTTGAT 189022 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||| ||||| || || ||||| |||||||| ||| | |||||||||| | || ||||| Sbjct 189023 CTTTGCCGGTAAACAATTGGAGGATGGAAGAACTCTTTCCGATTACAATATTCAAAAAGA 189082 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || || ||||| ||| | | |||||| Sbjct 189083 ATCCACCCTCCACCTCGTTCTCCGTCTTCGA 189113 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206212 TTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAA 206271 |||||||| || |||||| || | ||| || ||| ||||| || || ||||| Sbjct 188478 TTGGAAGTCGAGGCTTCTGATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAG 188537 Query 206272 GGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGG 206331 |||||| || ||| ||| | ||||||||||| || |||||| | || ||||| || Sbjct 188538 GGAATTCCTCCAGACCAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAGGATGGCAGA 188597 Query 206332 ACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | | ||||||||| | || || || || ||||||||| | ||| | | ||||| Sbjct 188598 ACTCTTTCAGATTACAACATTCAAAAGGAATCGACTCTTCACTTGGTTCTACGTCTTCG 188656 >seq17 Length=1605837 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || |||||||| ||||| || || | || || || || ||| Sbjct 84216 CAGATCTTCGTCAAGACCCTCACAGGGAAAACCATTACCCTTGAGGTCGAGGCGTCAGAC 84157 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| || || || || || || |||||| || ||| || Sbjct 84156 ACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAG 84097 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||| |||||||| ||||||||||| | || | | ||||||||| || Sbjct 84096 AGATTGATCTTCGCTGGAAAGCAATTGGAAGATGGTCGCACACTCTCTGATTACAACATC 84037 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| |||||||| | || | ||||||| Sbjct 84036 CAGAAGGAGTCGACTCTTCATTTGGTCCTTCGACTTCG 83999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181805021953682