Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq113 132 4e-26 seq37 98.7 8e-16 seq425 95.1 1e-14 seq17 84.2 2e-11 >seq113 Length=346302 Score = 132 bits (146), Expect = 4e-26 Identities = 828/1312 (63%), Gaps = 38/1312 (3%) Strand=Plus/Plus Query 130762 TTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGA 130821 ||| || ||||||| ||| || || || |||| |||||||| ||| | || |||| || Sbjct 256637 TTGGAATTCACCAGACAGTACACGCCTCGCGTAGATGTTGCTGGTGTAAGGCTCAATGGC 256696 Query 130822 TTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGA 130881 |||||||| || | ||||| ||||| | || || ||||| ||||| || ||||| Sbjct 256697 CTCGTTGTTACCCAGAATTTGGGCTGTTGAGGCTGTTGGCATTGGTGCCAGTAGGAGAGA 256756 Query 130882 ATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGT 130941 || | || |||||| | | ||||| ||| | |||| |||| ||||| ||| || Sbjct 256757 GTTCCTAATACCGTGTTTAGATATTTTATCCTTGAGTTCAGCCCAGTCCCAGAGATTTGT 256816 Query 130942 AGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTC 131001 ||| | ||| |||||| ||| | || || ||||| | ||| | || | || Sbjct 256817 TGGTGTTACACC---CCACATGTCATACTGGAGGATGCCCTGGCTGACTGGTGAGCCTTT 256873 Query 131002 GAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTA 131061 | ||| |||||| | || | | | || || ||| || || | || || || Sbjct 256874 GTACGTCTCGTAGGTGCCCTTCTCCTGGGCGAGCTCGCATGAGGCCTCGAGGGCACCATA 256933 Query 131062 ATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAA 131121 ||| | ||| ||| || || |||| | || | || | ||||| ||| | ||| | Sbjct 256934 ATACAGGGTCTCGAAGATCTGGATATTGAGTTTCTGGGCCTCATTGCTGTCGAATGGATA 256993 Query 131122 TTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTT 131181 ||| | | ||| || ||||| |||||||| | |||| |||| || | |||| | Sbjct 256994 ACGCATCAGTAGAAATGCATCTGCCAGACCCTGAACTCCAATTCCCATGGGACGATGTCT 257053 Query 131182 TAAATTACATTTACGCGAACAT--TCGGTGGGATAAAGGTTAATGTCAATTATTTTGTTT 131239 | || | || | | | ||| | || ||| || | || || | | ||| Sbjct 257054 CATGTTGGAG--ACTCTTGCCTCCTCGATTGGGTAATAATTGACATCGATAACTCTGTCG 257111 Query 131240 AAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTT 131299 | ||| | | || |||| ||| | |||| |||| || | | || | || Sbjct 257112 AGATTTCTTGCGACGATTTTGACGACTGTCTTCAGCTTGTTAAAGTTGTAAGT--CTTTT 257169 Query 131300 TCGA--GGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGT 131357 || ||| || || || || || || |||| ||| ||||| || ||| | Sbjct 257170 TCACTGGGTCCACGAACATGTTGACTGCAATCGAGGCCAAATTGCAAACAGCAACTTCAT 257229 Query 131358 CATAA-TCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAA 131416 | ||| | |||| || || || | ||||| || |||| ||||| || ||||| Sbjct 257230 CGGGGCTCG-AGTACTCGACGATCTCAGTACACAAGTTGCTGCATTTTATCGTTCCCAAG 257288 Query 131417 TTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCCGT 131475 || | |||||| ||| ||| |||| ||||||||||| ||||||||| || || || Sbjct 257289 TTCTTCTGATTGGATTTTCTATTG-CATGCGTCCTTGTACAGCATGTAGGGAGTTCCAGT 257347 Query 131476 TTCGACTTGAGTTTCAATAAT-GTA-TCGAAAGAGTTTTCGAGCAGACAATTGATATTTG 131533 |||||||| | || ||| | | || | ||| | ||||| || ||| ||| Sbjct 257348 CTCGACTTGTGACATAAGAATTGCAGTCCA--GAGCTCACGAGCTTTCACCTGACGCTTG 257405 Query 131534 TATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTG 131593 | || | | ||||| | | ||| | | | || || | | || | | || Sbjct 257406 AAACGGGCCTCTCCCTCGTACTGTGTGTAGAGCTTCTCGAATTCCTCACCCCAGG---TG 257462 Query 131594 TCCAAATTGG----GACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAAC 131649 || | || || |||||||| ||| ||||| || |||||| ||| | ||| Sbjct 257463 TC-ACATAGGCCTGGACATTCGTGGGGGCACATCAGACTCCACACATCGTCCGCCAGAAC 257521 Query 131650 TCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTC 131709 || ||||| || |||||||| | ||| | ||||| || || || | ||| | || Sbjct 257522 ACGTTTCATGAATAAATCCGGGATCCAGAGTGCGTAAAAAAGTTCACGTGCTCGATATTC 257581 Query 131710 TTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTC 131769 ||| | || | |||| || | || | || || || ||||| || |||||||| || Sbjct 257582 CTCTTTTCCTGTGTTTTTCTTGAGATCGAGAACATCGAATATGTCAGCGTGCCAGGGCTC 257641 Query 131770 CAAATACACTGCCATTGCGCC------TTTGCGCTTACCGCCTTGATTAACATGACGAAC 131823 | ||| | || | ||| || |||| || || || |||| ||||| ||| | Sbjct 257642 GAGATAAATGGCAAATGCTCCAGGACGTTTG---TTTCCACCCTGATCAACATAACGTGC 257698 Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTT 131883 |||| ||||| || || | |||||| | | || |||| | |||||||| | Sbjct 257699 TGTGTTATTGTAAACACGAAGCATGGGTACAAGCCCATTGGATATACCATTGGTACCAGC 257758 Query 131884 AATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTT 131943 ||| | || ||||||||||| ||| || || | |||||| || || | |||| Sbjct 257759 AATTCGTGTCCCCTTGGCTCTGATACAGTGTACATTCACTCCAATTCCACCAGCTGATTT 257818 Query 131944 AGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGC-GGCAA 132002 ||| ||||| || | | || |||| ||||| || | | |||||| | | || Sbjct 257819 GCTGATGAGTGCACACCTCTTGAGGGTGTCGTAGATGCCATTAATGCTGTCGTCAGTCAT 257878 Query 132003 TGTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAA 132054 |||| | | ||| || ||||| |||||| | |||| |||||| || Sbjct 257879 TGTC-AGGAGAAAACAGCTGGACATCTGTTGTCTACCAGTGCAGGCTGAGAA 257929 >seq37 Length=1171872 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||||||||| ||| | | | | || || | ||||||||| Sbjct 189088 GTGGATTCTTTTTGAATATTGTAATCGGAAAGAGTTCTTCCATCCTCCAATTGTTTACCG 189029 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | |||||||||||| || || | ||| |||||||| ||||| ||| Sbjct 189028 GCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTGAATCTTAGCTTTA 188969 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | ||||| | || ||||| || || || || | |||||| |||||||| Sbjct 188968 ACATTTTCGATGGTGTCAGATGCCTCAACCTCCAGTGTAATGGTTTTGCCAGTCAGAGTC 188909 Query 27231 TTCACAAAGATTTGCAT 27247 || || || |||||||| Sbjct 188908 TTTACGAATATTTGCAT 188892 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || ||||||||||| |||||||| | ||| || | || || Sbjct 189556 ACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAGAGAGTTCTGC-CATCCTC 189498 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || |||||||| ||| | || | ||| || ||||| || || | ||||| ||||| Sbjct 189497 CAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATGCCCTCCTTATCCTG 189438 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | |||| | ||| || | ||| || ||||| || || || | || Sbjct 189437 GATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTACTTCAAGTGTGATGGTCTT 189378 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| || ||||| || ||||| Sbjct 189377 TCCAGTCAGAGTCTTGACAAAAATCTGCAT 189348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||||||||| || | | | | || || Sbjct 188872 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAAAGAGTTCTTCCATCCTCC 188813 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| ||| | || ||||| || || || || || | |||||||| || | Sbjct 188812 AATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGG 188753 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | |||| | ||||| | || || || || || || || | |||| Sbjct 188752 ATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACCTCCAGGGTGATGGTTTTG 188693 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| || || || |||||||| Sbjct 188692 CCAGTCAGAGTCTTTACGAATATTTGCAT 188664 >seq425 Length=33725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || || | || |||||| || | || || || || ||||| ||||| || Sbjct 29695 CCACCACGTAATCTCAGTACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAG 29754 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||||||||| ||||| ||| | || || | |||||| || || || Sbjct 29755 AGAGTGCGTCCATCTTCGAGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGA 29814 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||| ||| ||| | |||| | ||||| | || || || Sbjct 29815 ATTCCCTCCTTGTCCTGGATTTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTACC 29874 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||| ||||| || ||||| |||||||| ||||| Sbjct 29875 TCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTAACAAAGATCTGCAT 29921 >seq17 Length=1605837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | |||||||| | ||||| || || || ||||| || || Sbjct 84219 TGCCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAG 84278 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| |||| || |||||||| || ||| | || | | ||| || || || | Sbjct 84279 AAAGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGG 84338 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||| || || | | | || | ||| || | || |||| Sbjct 84339 GAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAA 84398 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || | ||||||||||| |||||||| || || ||||| Sbjct 84399 CCTCTAGGGTGATGGTCTTGCCCGTCAGTGTTTTCACGAATATCTGCAT 84447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424929003598704