Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq109 134 2e-26 seq113 127 2e-24 >seq109 Length=386716 Score = 134 bits (148), Expect = 2e-26 Identities = 480/734 (65%), Gaps = 16/734 (2%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| ||| || | | | ||||| || ||||| | |||||||| ||| Sbjct 264837 TGAGACATACAACTATCTGTCCGAGAGATACTTCACTCACGCATCACCAACCCTCTTCTC 264896 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || | || | | |||||||| ||||| ||||| | | |||| || ||| Sbjct 264897 AGCCTGCACTTGTATACAACAGATGTCCAGCTGTTTCCTTCTAACAATGACTGAGGACAG 264956 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| ||||||||||| || |||||| |||||| | || ||||| | ||||| Sbjct 264957 CATCGATGGCATCTACGACACCCTCAAGAGGTGTGCACTTGTCAGCAAGTCAGCTGGTGG 265016 Query 53422 TATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 ||| || | | || || | | || | || || || |||| ||| || || || Sbjct 265017 TATTGG-AGTGAATGTTC-ACTGTATCAGAGCCAAGGGGACACGAATTGCTGGTACCAAT 265074 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 || || || |||| | || || ||||| || || | ||| ||||| || || ||||| Sbjct 265075 GGTGTATCCAATGGGCTTGTACCCATGCTTCGTGTTTACAATAACACAGCACGTTACGTT 265134 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 | |||||||| || || || | || ||||| || |||||||| |||||||| Sbjct 265135 GATCAGGGTGGAAACAAACGTCCTGGCGCATTTGCCATTTATCTCGAGCCCTGGCACGCT 265194 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAA-TCAGG--GTGACGAAGAGATGCGCTGC 53656 ||||| | || ||||||| || ||| |||| || ||| | | | || Sbjct 265195 GACATCTTTGATGTTCTCGATCTCAAGAAGAACACAGGAAAGGAGGAATATA-GAGC--G 265251 Query 53657 CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 ||||| ||||| ||| || || |||||||| || || |||||| || || | ||| Sbjct 265252 CGTGAGCTGTTCTAC-GCACTCTGGATTCCTGATCTATTCATGAAACGAGTCCTGGCGGA 265310 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTC-TACGGTG 53774 | |||| ||||||||||| ||||||| || ||||| | | || | |||| Sbjct 265311 TGGTATGTGGAGTCTGATGTGCCCCCACGAGTGTCCAGGCCT-TTGTGACTCTTGGGGTG 265369 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTC 53833 | |||||| | | | || | |||| || | ||| || | |||| |||| Sbjct 265370 AAGAGTTTGAGAATCTCTACGTAAAATACG-AGAACGAGGCTCGTTTCAAGCGTCAGGTG 265428 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 ||||| ||||| | ||| |||||| || | | || || ||||| || || || ||| Sbjct 265429 AAGGCTCGTGATCTCTGGACTGCAATTCTTATGTCACAAGTCGAGACTGGGACCCCCTAC 265488 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAA 53953 ||| ||||| || | |||| ||| ||| ||||||||| | || || ||| Sbjct 265489 ATGCTGTACAAAGACGCATGCAACCGGAAATCCAATCAGAAGAACTTGGGAACGATAAAA 265548 Query 53954 TCGAGCAACTTATG 53967 | |||||||| || Sbjct 265549 TGCAGCAACTTGTG 265562 >seq113 Length=346302 Score = 127 bits (140), Expect = 2e-24 Identities = 474/736 (64%), Gaps = 18/736 (2%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| ||| || | | | ||||| || ||||| | |||||||| ||| Sbjct 257984 TGAGACATACAACTATCTGTCCGAGAGATACTTCACTCACGCATCACCAACCCTTTTCTC 257925 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || | || | | |||||||| ||||| || || || | |||| || ||| Sbjct 257924 AGCCTGCACTGGTAGACAACAGATGTCCAGCTGTTTTCTCCTGACAATGACTGACGACAG 257865 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || | ||||||||||| || |||||| |||||| | |||| ||| | | ||||| Sbjct 257864 CATTAATGGCATCTACGACACCCTCAAGAGGTGTGCACTCATCAGCAAATCAGCTGGTGG 257805 Query 53422 TATCGG------TATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGAC 53475 || || | | ||||| || | || || || |||| ||| || || Sbjct 257804 AATTGGAGTGAATGTACACTG------TATCAGAGCCAAGGGGACACGAATTGCTGGTAC 257751 Query 53476 GAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 || || | || |||| | || || ||||| || || | ||| ||||| || || || Sbjct 257750 CAATGGTATATCCAATGGGCTTGTACCCATGCTTCGTGTTTACAATAACACAGCACGTTA 257691 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 || | |||||||| || || || | || ||||| || |||||||| ||||| Sbjct 257690 TGTTGATCAGGGTGGAAACAAACGTCCTGGAGCATTTGCCATTTATCTCGAGCCCTGGCA 257631 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCA-GGGTGACGAAGAGATGCGCT 53654 ||| ||||| | || ||||||| || | || || || | || || || Sbjct 257630 CGCTGACATATTCGATGTTCTCGATCT-CAAGAAAAACACAGGAAAAGAGGAATATCGAG 257572 Query 53655 GCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGG 53714 ||||| || ||| || || ||||| ||||| | |||||| || || | || Sbjct 257571 CACGTGAACTTTTTTACGCACTCTGGATCCCGGATTTATTCATGAAACGTGTTCTGGCGG 257512 Query 53715 ACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTG 53774 |||| | |||| ||||||||||| |||| || || ||||| | || |||| Sbjct 257511 ACGATGTGTGGAGTCTGATGTGCCCCCACGAATGTCCAGGCCTATGTGACACCTGGGGTG 257452 Query 53775 AGGAGTTTAACGAGATGTATCGGAC-GTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833 |||| || | || | || | || ||||| | ||| ||| | |||| |||| Sbjct 257451 AGGAATTCGAGAAGCTCTA-CACACAGTACGAGGGAGAGGCCCGTTTCAAGCGTCAGGTG 257393 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 || || |||||| | ||| |||||| || | | || || ||||| ||||| || ||| Sbjct 257392 AAAGCTCGTGAGCTCTGGACTGCAATTCTTATGTCACAAGTCGAGACTGGAACTCCCTAC 257333 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGA-GCAACCAGAAGAACATCGGCGTCATCAA 53952 ||| |||||||| | ||| |||| | ||| ||||||||| | || || || Sbjct 257332 ATGCTGTACAAGGACGCATGCAA-TAGAAAATCCAATCAGAAGAACTTGGGAACGATAAA 257274 Query 53953 ATCGAGCAACTTATGT 53968 || |||||||| ||| Sbjct 257273 ATGCAGCAACTTGTGT 257258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208872511600