Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq37 188 8e-43 seq17 170 2e-37 seq7 159 4e-34 seq425 132 5e-26 seq113 84.2 2e-11 >seq37 Length=1171872 Score = 188 bits (208), Expect = 8e-43 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || || ||||| || || || || ||||| ||| | Sbjct 188663 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGGCTTC 188722 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| |||| | ||||| || || |||||||| |||||||||||||||||||| Sbjct 188723 TGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 188782 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || |||||||| ||| | ||||||| | || || |||| || || Sbjct 188783 GCAACGTCTTATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCAGATTACAA 188842 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | ||||||||||| |||||||| | ||| | |||||||| |||||| Sbjct 188843 TATTCAAAAGGAATCTACTCTTCACTTGGTCCTACGTCTTCGTGGTGGA 188891 Score = 152 bits (168), Expect = 6e-32 Identities = 135/169 (80%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| |||| | ||||| || || |||||||| |||||||||||||||||||| Sbjct 188495 TGATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCA 188554 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || ||||||||||| || ||||||| | || || |||| || || Sbjct 188555 GCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAGGATGGCAGAACTCTTTCAGATTACAA 188614 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||||||||| |||||||| | || | |||||||| |||||| Sbjct 188615 CATTCAAAAGGAATCGACTCTTCACTTGGTTCTACGTCTTCGTGGTGGA 188663 Score = 152 bits (168), Expect = 6e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| || || || ||||| || || ||||| || ||| | Sbjct 189347 AATGCAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACACTTGAAGTAGAGGCCTC 189406 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | ||||| || || ||||| |||||||| || ||||| || || Sbjct 189407 TGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCA 189466 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | || || |||||||| ||||| ||||||| | || || ||||||| || Sbjct 189467 GCAACGTTTGATCTTCGCTGGTAAACAACTGGAGGATGGCAGAACTCTCTCAGACTACAA 189526 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| ||||| || ||||| | || | ||||| | |||||| Sbjct 189527 CATTCAAAAAGAATCGACCCTTCACTTGGTTCTTCGTCTCAGAGGTGGA 189575 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| || ||||| || || || || ||||| | | Sbjct 189120 ATGCAGATATTCGTAAAGACACTTACAGGAAAGACGATCACCCTCGAAGTTGAAGCCTCT 189179 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || || || |||||||| || || ||||| ||||||||| Sbjct 189180 GACACAATTGAAAATGTCAAAGCCAAGATACAGGACAAAGAAGGCATTCCACCAGACCAG 189239 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || |||||||| ||| | ||||||| | || || | ||||| ||| Sbjct 189240 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCGGACTACAAT 189299 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || || |||||||| ||| | || | ||||| | |||||| Sbjct 189300 ATCCAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTCTCAGGGGTGGA 189347 >seq17 Length=1605837 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || || || ||||| |||||||| ||| | Sbjct 84219 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAAACCATTACCCTTGAGGTCGAGGCGTCA 84160 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | ||||||||||| |||||||||||||||||||| ||||||||| Sbjct 84159 GACACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 84100 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| |||||| | || |||| ||| || || | || || || Sbjct 84099 CAGAGATTGATCTTCGCTGGAAAGCAATTGGAAGATGGTCGCACACTCTCTGATTACAAC 84040 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||||||| | ||| | || ||||| || || Sbjct 84039 ATCCAGAAGGAGTCGACTCTTCATTTGGTCCTTCGACTTCGTGGAGG 83993 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || || || || || |||||||| ||| | Sbjct 83178 ATGCAGATCTTCGTCAAGACTCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCTTCA 83119 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||||||||| |||||||||||||| ||||| ||||||||| Sbjct 83118 GACACCATCGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGGATTCCCCCAGACCAG 83059 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| || || || ||||| | || || || | || || || Sbjct 83058 CAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACACTCTCTGATTACAAC 82999 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||||||||| ||||| | ||||| || || || Sbjct 82998 ATCCAGAAGGAATCCACTCTTCACTTAGTCCTCCGTCTCCGTGGGGG 82952 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || || || ||||| |||||||| ||| | Sbjct 83991 ATGCAGATCTTCGTCAAGACTCTCACAGGGAAAACCATTACCCTTGAGGTCGAGGCGTCA 83932 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||||||||||| |||||||||||||||||||| ||||||||| Sbjct 83931 GACACTATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 83872 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| ||||| || || || ||||| | || || || | || || ||| Sbjct 83871 CAGAGATTGATTTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTACAAT 83812 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||| | ||| | || ||||| || || Sbjct 83811 ATCCAGAAGGAGTCTACCCTTCATTTGGTCCTTCGACTTCGTGGAGG 83765 Score = 156 bits (172), Expect = 5e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || || || || || |||||||| ||| | Sbjct 83535 ATGCAGATCTTCGTCAAGACTCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCTTCA 83476 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||||||||| |||||||||||||| ||||| ||||||||| Sbjct 83475 GACACCATCGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGGATTCCCCCAGACCAG 83416 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| || || || ||||| | || || || | || || || Sbjct 83415 CAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACACTCTCTGATTACAAC 83356 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 |||| ||||||||||||||||| ||||| | ||||| || || Sbjct 83355 ATCCAGAAGGAATCCACTCTTCACTTAGTCCTCCGTCTCCGTGG 83312 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || || || |||||||| || || || ||||||||| | Sbjct 84448 AATGCAGATATTCGTGAAAACACTGACGGGCAAGACCATCACCCTAGAGGTTGAGGCTTC 84389 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| || | ||||||||||| |||||||||||||||||||| |||||||| Sbjct 84388 GGATACTATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCA 84329 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || || ||||| || || || ||||| | || || || | || ||||| Sbjct 84328 GCAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTATAA 84269 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||| || || |||||| | ||| | || ||||| || || Sbjct 84268 TATCCAGAAGGAGTCTACCCTTCATTTGGTCCTTCGACTTCGTGGAGG 84221 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || || || || || |||||||| ||| | Sbjct 83763 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCGTCA 83704 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | ||||||||||| |||||||| ||||||||||| ||||||||| Sbjct 83703 GACACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATTCCCCCAGACCAG 83644 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || ||||| || || || ||||| | || || || | || || || Sbjct 83643 CAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTACAAC 83584 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | ||| | || ||||| || || Sbjct 83583 ATCCAGAAGGAGTCTACCCTCCACTTGGTCCTTCGACTTCGTGGAGG 83537 >seq7 Length=2059422 Score = 159 bits (176), Expect = 4e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| | || || |||||||| || |||||||||||| | Sbjct 739942 AATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATCACCCTTGAGGTTGAGCCTTC 739883 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | |||| | || || || |||||||| || |||||||||||||||||||| Sbjct 739882 TGATACCATCGAAAATGTCAAAGCCAAGATTCAGGATAAAGAGGGAATTCCTCCAGACCA 739823 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| | ||||| ||||| || ||||||||||||| ||||| || | || || || Sbjct 739822 ACAGCGATTGATTTTCGCTGGGAAACAACTCGAGGATGGGCGTACTCTCTCTGATTACAA 739763 Query 27585 TGTCCAAAAGG 27595 ||||||||| Sbjct 739762 CATCCAAAAGG 739752 >seq425 Length=33725 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || || || || || || ||||| ||| | Sbjct 29921 ATGCAGATCTTTGTTAAAACCCTAACGGGGAAAACCATCACCCTCGAGGTAGAGGCTTCC 29862 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || ||||| |||||||||||||||||||| |||||||| Sbjct 29861 GACACAATCGAAAATGTCAAAGCCAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAA 29802 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||||||||| ||||| |||| || || || | || || || Sbjct 29801 CAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGACGCACTCTCTCTGATTACAAC 29742 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || |||||||| || ||||| Sbjct 29741 ATTCAGAAGGAATCAACACTTCA 29719 >seq113 Length=346302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 215/319 (67%), Gaps = 10/319 (3%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||||||||| || || ||||| || | || || || |||| ||| ||||| || | Sbjct 257242 ACTCGACGATCTCAGTACACAAGTTGCTGCATTTTATCGTTCCCAAGTTCTTCTGATTGG 257301 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 | || ||||| ||||||||||| |||||| || || || |||||||| |||||| Sbjct 257302 ATTTTCTATTGCATGCGTCCTTGTACAGCATGTAGGGAGTTCCAGTCTCGACTTGTGACA 257361 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACC--AC-CTTGCGGAATTTGCCTTCGG 81124 | || || || ||| | ||| || || || ||| || ||| ||| | | || Sbjct 257362 TAAGAATTGCAGTCCAGAGCTCACGAGCTTTCACCTGACGCTT---GAAACGGGCCTCTC 257418 Query 81125 CCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGT-TCAGTGAGGTCTGG 81182 || | |||| | ||| |||||| ||||| | |||| | || ||| ||| |||| Sbjct 257419 CCTCGTACTGTGTGTAGAGCTTC-TCGAATTCCTCACC-CCAGGTGTCACATAGGCCTGG 257476 Query 81183 GCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGC 81242 || |||| ||||||||||| ||| | ||| | ||| |||||||| Sbjct 257477 ACATTCGTGGGGGCACATCAGACTCCACACATCGTCCGCCAGAACACGTTTCATGAATAA 257536 Query 81243 GTCAGGGATCCAGAGGGCG 81261 || ||||||||||| ||| Sbjct 257537 ATCCGGGATCCAGAGTGCG 257555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570302971707040