Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq425 105 4e-18 seq37 104 1e-17 seq17 100 2e-16 >seq425 Length=33725 Score = 105 bits (116), Expect = 4e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || ||||| |||||||| ||||| || || || || | ||||| Sbjct 29713 ACCAAGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGTCCATCTTCG 29772 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || ||||| || || || | | ||||||||| || || | |||||||||||| | Sbjct 29773 AGCTGCTTACCAGCGAAGATCAGCCTCTGTTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 29832 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| | ||| || | |||||||| ||| || || | ||| || ||||| Sbjct 29833 AT-TTTGGCTTTGACATTTTCGATTGTGTCGGAAGCCTCTACCTCGAGGGTGATGGTTTT 29891 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || |||| ||||| ||||| ||||||||||||| Sbjct 29892 CCCCGTTAGGGTTTTAACAAAGATCTGCATGTTGA 29926 >seq37 Length=1171872 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | ||||||||||||||| ||| || || || || || || ||| Sbjct 189346 CCACCCCTGAGACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAGTCCGAA 189287 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || || | ||||||||| || || || |||||||| ||||| || || Sbjct 189286 AGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGTGGA 189227 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||| |||| ||||| ||| | | ||||||||| | || || Sbjct 189226 ATGCCTTCTTTGTCCTGT-ATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCTTCAAC 189168 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | ||| ||||| || || || | || || || || ||||||||| Sbjct 189167 TTCGAGGGTGATCGTCTTTCCTGTAAGTGTCTTTACGAATATCTGCATG 189119 Score = 96.9 bits (106), Expect = 2e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| |||||||||||||| ||||||||| Sbjct 188662 CCACCACGAAGACGTAGAACCAAGTGAAGAGTCGATTCCTTTTGAATGTTGTAATCTGAA 188603 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || ||||| || ||||| || || || | ||| || ||||| || || Sbjct 188602 AGAGTTCTGCCATCCTCAAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGA 188543 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||| ||||| |||||| Sbjct 188542 ATTCCCTCTTTGTCCTGGATCTT 188520 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| ||||||||||| || ||||||||| Sbjct 188890 CCACCACGAAGACGTAGGACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAATCTGAA 188831 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || || | ||||||||| || || || | ||| || ||||| || || Sbjct 188830 AGAGTTCTTCCATCCTCCAATTGTTTACCAGCGAAGATAAGACGTTGCTGGTCTGGAGGA 188771 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||| ||||| |||||| || | | ||| ||||| ||| || Sbjct 188770 ATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCAGAAGCCTCGACC 188711 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || ||||| || || | || || || || || ||||| Sbjct 188710 TCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188664 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| |||||| | || | ||||| ||| || |||||||| || ||||| || Sbjct 189119 GCCTCCTCGAAGACGGAGAACGAGGTGGAGGGTGGATTCTTTTTGAATATTGTAATCGGA 189060 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| |||| | || || | ||||||||||||||| || ||||||||||| || || || Sbjct 189059 AAGAGTTCTTCCATCCTCCAATTGTTTACCGGCAAAGATCAAACGCTGTTGATCTGGTGG 189000 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || || ||| ||| || | |||||| | || ||||| ||| | Sbjct 188999 GATACCTTCTTTATCT-TGAATCTTAGCTTTAACATTTTCGATGGTGTCAGATGCCTCAA 188941 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || ||||| || || | || || || || || ||||| Sbjct 188940 CCTCCAGTGTAATGGTTTTGCCAGTCAGAGTCTTTACGAATATTTGCAT 188892 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || || || || ||||||||||| || ||||| Sbjct 189574 CCACCTCTGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAG 189515 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || || ||||||||||| || || || ||||| || || || || || Sbjct 189514 AGAGTTCTGCCATCCTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGG 189455 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||||| || |||||| || | | ||| || || | ||| ||| Sbjct 189454 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTATCAGAGGCCTCTACT 189395 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || || | || || |||||||||||||| Sbjct 189394 TCAAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAATCTGCAT 189348 >seq17 Length=1605837 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | |||||||| || || |||||| || || || ||||| || Sbjct 83764 GCCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGA 83823 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||| || || ||||| || || || || || | ||| ||||| || || Sbjct 83824 AAGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAAATCAATCTCTGCTGGTCTGGGGG 83883 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCC 34656 | |||||||||||| ||| ||| | || ||| | ||| |||||| ||| ||| Sbjct 83884 AATTCCCTCCTTGTCCTGGAT-TTTAGCCTTGACGTTCTCAATAGTGTCTGACGC-CTCG 83941 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | ||| || ||||| || || | || || || || ||||||||| Sbjct 83942 ACCTCAAGGGTAATGGTTTTCCCTGTGAGAGTCTTGACGAAGATCTGCATG 83992 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | |||||||| ||||| |||||| || ||||| ||||| || Sbjct 83992 GCCTCCACGAAGTCGAAGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGA 84051 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| || | ||||| | ||| || || || || || || | ||| ||||| || || Sbjct 84052 GAGTGTGCGACCATCTTCCAATTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGG 84111 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCC 34656 | |||||||||||| ||| ||| | || || | || |||||| ||| ||| Sbjct 84112 AATTCCCTCCTTGTCCTGGAT-TTTAGCCTTGACATTTTCGATGGTGTCTGACGC-CTCG 84169 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | ||| || ||||| || || | || || || || ||||||||| Sbjct 84170 ACCTCAAGGGTAATGGTTTTCCCTGTGAGGGTCTTGACGAAGATCTGCATG 84220 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | |||||||| || || |||||| || || |||||||| || Sbjct 84220 GCCTCCACGAAGTCGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTATAATCAGA 84279 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||| || || ||||| || || || || || | ||| ||||| || || Sbjct 84280 AAGAGTGCGTCCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGG 84339 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | || ||| | ||| || || ||| | Sbjct 84340 AATTCCCTCCTTGTCCTGGAT-TTTAGCCTTGACGTTCTCAATAGTATCCGAAGCCTCAA 84398 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | ||| || || || || || | |||||||| || |||||||| || Sbjct 84399 CCTCTAGGGTGATGGTCTTGCCCGTCAGTGTTTTCACGAATATCTGCATTTT 84450 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || || || |||||| ||||| || ||||| ||||| || ||||| || Sbjct 82961 AGACGGAGGACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGT 83020 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || ||||| || || || || || | ||| ||||| || || | |||||| Sbjct 83021 CCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCC 83080 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || ||| | || |||||| ||| || || | ||| Sbjct 83081 TTGTCCTGGAT-TTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGT 83139 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || | || || || || ||||||||| Sbjct 83140 GATGGTTTTCCCTGTGAGAGTCTTGACGAAGATCTGCATG 83179 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || || || |||||| ||||| || ||||| ||||| || ||||| || Sbjct 83318 AGACGGAGGACTAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAGAGTGTGCGT 83377 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || ||||| || || || || || | ||| ||||| || || | |||||| Sbjct 83378 CCGTCCTCCAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGGAATCCCCTCC 83437 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || ||| | || |||||| ||| || || | ||| Sbjct 83438 TTGTCCTGGAT-TTTAGCCTTGACGTTTTCGATGGTGTCTGAAGCCTCGACCTCAAGGGT 83496 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || | || || || || ||||||||| Sbjct 83497 GATGGTTTTCCCTGTGAGAGTCTTGACGAAGATCTGCATG 83536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314725603130786