Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq37 149 5e-31 seq112 129 5e-25 seq17 114 1e-20 seq7 100 2e-16 seq425 96.9 3e-15 >seq37 Length=1171872 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| ||||| |||||||| ||||| | ||||| || || || || | || Sbjct 188892 ATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATTACACTGGAGGTTGAGGCATCT 188951 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || |||||||| |||||||| || ||||| |||||| Sbjct 188952 GACACCATCGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGTATCCCACCAGATCAA 189011 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||| ||||||||||| || | || ||||||||||||| Sbjct 189012 CAGCGTTTGATCTTTGCCGGTAAACAATTGGAGGATGGAAGAACTCTTTCCGATTACAAT 189071 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | || | ||| | ||| | || || ||||| Sbjct 189072 ATTCAAAAAGAATCCACCCTCCACCTCGTTCTCCGTCTTCGAGGAGGCAT 189121 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| ||||| || || || || ||| | || || || ||||| ||| | || Sbjct 189119 CATGCAGATATTCGTAAAGACACTTACAGGAAAGACGATCACCCTCGAAGTTGAAGCCTC 189178 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | |||||| || || || |||||||||||||| ||||| || || Sbjct 189179 TGACACAATTGAAAATGTCAAAGCCAAGATACAGGACAAAGAAGGCATTCCACCAGACCA 189238 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||| || ||||||||||| || | || |||| || ||||| Sbjct 189239 GCAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCGGACTACAA 189298 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | ||||||||| | ||| | ||||||| || Sbjct 189299 TATCCAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTCTCAGGGGTGGAAT 189349 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| || ||| | || || |||||||| || | || Sbjct 189348 ATGCAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACACTTGAAGTAGAGGCCTCT 189407 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || || || || ||||| || || ||||| Sbjct 189408 GATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCAG 189467 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || |||||| |||| || | || | || || |||||| Sbjct 189468 CAACGTTTGATCTTCGCTGGTAAACAACTGGAGGATGGCAGAACTCTCTCAGACTACAAC 189527 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || |||||| | || |||||| | ||| | | ||||| Sbjct 189528 ATTCAAAAAGAATCGACCCTTCACTTGGTTCTTCGTCTCAGAGGTGG 189574 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| ||||| |||||||| ||||| | || || || || || || | || Sbjct 188664 ATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGGCTTCT 188723 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || |||||||| || || || || || || Sbjct 188724 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCAG 188783 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || ||||||||||| || | || |||| |||||||| Sbjct 188784 CAACGTCTTATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCAGATTACAAT 188843 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || ||||| | ||| | || ||||| || Sbjct 188844 ATTCAAAAGGAATCTACTCTTCACTTGGTCCTACGTCTTCGTGGTGGAAT 188893 >seq112 Length=360945 Score = 129 bits (142), Expect = 5e-25 Identities = 194/276 (70%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 135504 GAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGT 135563 |||| || ||||| || ||||| ||| | ||||| ||||| ||||| || | || ||| Sbjct 302243 GAGAGGGAAAAATTCATGGATTCATGAGGATGTACTGGGCTAAAAAAATTCTCGAGTGGA 302184 Query 135564 CTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAG 135623 | | || | || || ||| |||| | | | ||||| ||||| | | Sbjct 302183 GCCGAACACCAGAGGATGCCCTAGCCTGGTCAATCTATCTCAATGACAGGTACAGCATGG 302124 Query 135624 ATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATC 135683 ||||| | ||| | ||||| || || || ||||||||||| || || || | ||||||| Sbjct 302123 ATGGAAGAGATCCCAATGGTTATGTTGGATGTATGTGGTCAATCTGTGGAATTCACGATC 302064 Query 135684 AAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTA 135743 |||||||||| ||||| | | ||||| || ||||| || |||||||| | || ||| Sbjct 302063 AAGGATGGAAAGAGCGTGAGATATTTGGAAAAATTCGTTACATGAACTACAAAGGATGTG 302004 Query 135744 CAAGAAAATTTAATGTAAATTTGTACGTGAGAAAAT 135779 ||||||||| |||| || |||||| | ||||| Sbjct 302003 AAAGAAAATTCGATGTGAAAGCGTACGTTAAAAAAT 301968 >seq17 Length=1605837 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || || | ||||| ||||| || || |||| Sbjct 84220 CATGCAGATCTTCGTCAAGACCCTCACAGGGAAAACCATTACCCTTGAGGTCGAGGCGTC 84161 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| ||||| || ||||| || || || || || || || Sbjct 84160 AGACACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCA 84101 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| || || ||||||||||| || || | || |||||||| Sbjct 84100 GCAGAGATTGATCTTCGCTGGAAAGCAATTGGAAGATGGTCGCACACTCTCTGATTACAA 84041 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| | |||||||| | || | || || ||||| Sbjct 84040 CATCCAGAAGGAGTCGACTCTTCATTTGGTCCTTCGACTTCGTGGAGGCAT 83990 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || ||||| ||||| |||||| | || || || || || || | || Sbjct 84447 ATGCAGATATTCGTGAAAACACTGACGGGCAAGACCATCACCCTAGAGGTTGAGGCTTCG 84388 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| ||||| || ||||| || || || || || || || Sbjct 84387 GATACTATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 84328 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || ||||| |||| ||| | || |||| ||||| || Sbjct 84327 CAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTATAAT 84268 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | |||||||| | || | || || ||||| Sbjct 84267 ATCCAGAAGGAGTCTACCCTTCATTTGGTCCTTCGACTTCGTGGAGGCAT 84218 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || || | || || ||||| || || |||| Sbjct 83764 CATGCAGATCTTCGTCAAGACCCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCGTC 83705 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| ||||| || |||||||| || || || || || || Sbjct 83704 AGACACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATTCCCCCAGACCA 83645 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| || ||||| |||| ||| | || |||| |||||||| Sbjct 83644 GCAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTACAA 83585 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || ||||| | || | || || ||||| Sbjct 83584 CATCCAGAAGGAGTCTACCCTCCACTTGGTCCTTCGACTTCGTGGAGGCAT 83534 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||| || || || | || || ||||| || || | || Sbjct 83179 CATGCAGATCTTCGTCAAGACTCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCTTC 83120 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| ||||| || ||||| || || || || || || || Sbjct 83119 AGACACCATCGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGGATTCCCCCAGACCA 83060 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| || ||||| |||| ||| | || | || |||||||| Sbjct 83059 GCAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACACTCTCTGATTACAA 83000 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || ||||| || || | || || || | ||| | || || ||| Sbjct 82999 CATCCAGAAGGAATCCACTCTTCACTTAGTCCTCCGTCTCCGTGGGGGC 82951 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||| || || || | || || ||||| || || | || Sbjct 83536 CATGCAGATCTTCGTCAAGACTCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCTTC 83477 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| ||||| || ||||| || || || || || || || Sbjct 83476 AGACACCATCGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGGATTCCCCCAGACCA 83417 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| || ||||| |||| ||| | || | || |||||||| Sbjct 83416 GCAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACACTCTCTGATTACAA 83357 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||| || || Sbjct 83356 CATCCAGAAGGAATCCAC 83339 >seq7 Length=2059422 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| |||| || ||||| || || || || Sbjct 739941 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATCACCCTTGAGGTTGAGCCTTCT 739882 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| || ||||| || || || || || ||| Sbjct 739881 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGATAAAGAGGGAATTCCTCCAGACCAA 739822 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| || |||||| | || || | || | || ||||||||| Sbjct 739821 CAGCGATTGATTTTCGCTGGGAAACAACTCGAGGATGGGCGTACTCTCTCTGATTACAAC 739762 Query 27168 ATTCAAAAGG 27177 || ||||||| Sbjct 739761 ATCCAAAAGG 739752 >seq425 Length=33725 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || || || || | || || || || || || | || Sbjct 29922 CATGCAGATCTTTGTTAAAACCCTAACGGGGAAAACCATCACCCTCGAGGTAGAGGCTTC 29863 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | |||||| ||||| || ||||| || || || || || || || Sbjct 29862 CGACACAATCGAAAATGTCAAAGCCAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCA 29803 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| | | || | ||| || || || | ||||| | || | || |||||||| Sbjct 29802 ACAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGACGCACTCTCTCTGATTACAA 29743 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||| || || | || ||||| || | || || ||||| Sbjct 29742 CATTCAGAAGGAATCAACACTTCACTTGGTACTGAGATTACGTGGTGG 29695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434912735187840