Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq37 127 1e-24 seq425 104 2e-17 seq17 104 2e-17 seq7 93.3 3e-14 >seq37 Length=1171872 Score = 127 bits (140), Expect = 1e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || || || || || ||||| || || || || ||||| | | Sbjct 188891 AATGCAAATATTCGTAAAGACTCTGACTGGCAAAACCATTACACTGGAGGTTGAGGCATC 188950 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | |||| | ||||| | || | || || ||||||||| | || ||||||| Sbjct 188951 TGACACCATCGAAAATGTTAAAGCTAAGA-TTCAAGATAAAGAAGGTATCCCACCAGATC 189009 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||||| || |||||||| |||||| |||| || | | | ||| | |||||||| Sbjct 189010 AACAGCGTTTGATCTTTGCCGGTAAACAATTGGAGGATGGAAGAACTCTTTCCGATTACA 189069 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || |||||||| ||||| Sbjct 189070 ATATTCAAAAAGAATCCAC 189088 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || ||||| |||||||| ||||||||||| || | Sbjct 189120 ATGCAGATATTCGTAAAGACACTTACAGGAAAGACGATCACCCTCGAAGTTGAAGCCTCT 189179 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || || ||||||||||| | || ||||| || Sbjct 189180 GACACAATTGAAAATGTCAAAGCCAAGATACAGGACAAAGAAGGCATTCCACCAGACCAG 189239 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || || || |||||| |||| || | | | ||| | || ||||| Sbjct 189240 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCGGACTACAAT 189299 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||||||||| | ||||| ||| Sbjct 189300 ATCCAGAAAGAGTCCACTCTCCATTTGGTT 189329 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || || || ||||| || ||||| || ||||| || || | Sbjct 189347 AATGCAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACACTTGAAGTAGAGGCCTC 189406 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| | || || || || || || || | || || ||||| Sbjct 189407 TGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCA 189466 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || || || || ||||||||||| || | | ||| | || ||||| Sbjct 189467 GCAACGTTTGATCTTCGCTGGTAAACAACTGGAGGATGGCAGAACTCTCTCAGACTACAA 189526 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| |||||||| || || | || || ||| Sbjct 189527 CATTCAAAAAGAATCGACCCTTCACTTGGTT 189557 >seq425 Length=33725 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || ||||||||||| ||||| ||||| ||||| ||||| || || | Sbjct 29924 AACATGCAGATCTTTGTTAAAACCCTAACGGGGAAAACCATCACCCTCGAGGTAGAGGCT 29865 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | ||| ||||| ||||| || || | || ||||| Sbjct 29864 TCCGACACAATCGAAAATGTCAAAGCCAAAATCCAGGACAAGGAGGGAATTCCCCCAGAC 29805 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | | || || || || || || || ||||| | ||||||| | |||||| Sbjct 29804 CAACAGAGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGACGCACTCTCTCTGATTAC 29745 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || || || ||| | || || || | || || || || || Sbjct 29744 AACATTCAGAAGGAATCAACACTTCACTTGGTACTGAGATTACGTGGTGG 29695 >seq17 Length=1605837 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| ||||| || || || || | | Sbjct 83763 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCGTCA 83704 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||||| |||||||| || | || ||||| || Sbjct 83703 GACACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATTCCCCCAGACCAG 83644 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || || ||||| ||||| |||| ||||||| | ||||||||| Sbjct 83643 CAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTACAAC 83584 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 83583 ATCCAGAAGGAGTCTAC 83567 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| ||||| || ||||| || || ||||| || || ||||| | Sbjct 84450 AAAATGCAGATATTCGTGAAAACACTGACGGGCAAGACCATCACCCTAGAGGTTGAGGCT 84391 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| |||| | | || ||||| ||||| || || | || ||||| Sbjct 84390 TCGGATACTATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGAC 84331 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | || || || || || ||||| ||||| |||| ||||||| | ||||| Sbjct 84330 CAGCAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTAT 84271 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || ||||| || | ||||| || Sbjct 84270 AATATCCAGAAGGAGTCTACCCTTCATTTGGT 84239 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || ||||| ||||| || || || || | | Sbjct 83178 ATGCAGATCTTCGTCAAGACTCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCTTCA 83119 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||||| ||||| || || | || ||||| || Sbjct 83118 GACACCATCGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGGATTCCCCCAGACCAG 83059 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || || ||||| ||||| |||| |||||| | ||||||||| Sbjct 83058 CAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACACTCTCTGATTACAAC 82999 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || ||||| | || ||||| Sbjct 82998 ATCCAGAAGGAATCCACTCTTCACTTAGT 82970 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || ||||| ||||| || || || || | | Sbjct 83535 ATGCAGATCTTCGTCAAGACTCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCTTCA 83476 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||||| ||||| || || | || ||||| || Sbjct 83475 GACACCATCGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGGATTCCCCCAGACCAG 83416 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || || ||||| ||||| |||| |||||| | ||||||||| Sbjct 83415 CAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACACTCTCTGATTACAAC 83356 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || ||||| | || ||||| Sbjct 83355 ATCCAGAAGGAATCCACTCTTCACTTAGT 83327 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| || || || || || || | | Sbjct 84219 ATGCAGATCTTCGTCAAGACCCTCACAGGGAAAACCATTACCCTTGAGGTCGAGGCGTCA 84160 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||||| ||||| || || | || ||||| || Sbjct 84159 GACACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 84100 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || || || ||| ||||||| | ||||| | ||||||||| Sbjct 84099 CAGAGATTGATCTTCGCTGGAAAGCAATTGGAAGATGGTCGCACACTCTCTGATTACAAC 84040 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || | ||||| || Sbjct 84039 ATCCAGAAGGAGTCGACTCTTCATTTGGT 84011 >seq7 Length=2059422 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | |||||||| || ||||| || || ||||| | | Sbjct 739942 AATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACTATCACCCTTGAGGTTGAGCCTTC 739883 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| || ||| || ||||| || | || ||||| || Sbjct 739882 TGATACCATCGAAAATGTCAAAGCCAAGATTCAGGATAAAGAGGGAATTCCTCCAGACCA 739823 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| || || || || || |||||||| || || | || ||| | |||||||| Sbjct 739822 ACAGCGATTGATTTTCGCTGGGAAACAACTCGAGGATGGGCGTACTCTCTCTGATTACAA 739763 Query 23790 CATACAAAA 23798 ||| ||||| Sbjct 739762 CATCCAAAA 739754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005307489336