Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq47 111 1e-19 >seq47 Length=978588 Score = 111 bits (122), Expect = 1e-19 Identities = 135/183 (74%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 4814 TTGA-ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872 |||| || ||||| || |||| || |||||| || |||||||||||||| || |||| Sbjct 561233 TTGAGATGTAAGTTTCGATTAAAAGTGAATACATCTCCGAATGTATATTTTCCATTGCAA 561174 Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA 4932 ||||| ||||| || ||||| ||||| || ||||| ||||| | || |||| ||| | Sbjct 561173 CTTGAAACCCGTAGAAACATCTTGCTTCAGTGACTTGGACTTCTTGACTGAATCGTTCCA 561114 Query 4933 CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAA 4992 ||| || || || || || || || || || |||||||| | ||| || || || | Sbjct 561113 CTAGATTCTCATTCACAATTCCATCTGATGCAGCGAAAAACGCTAGAACGTGGGAAATGA 561054 Query 4993 AGT 4995 ||| Sbjct 561053 AGT 561051 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||| || ||||||| |||||| ||| ||| |||||||||||||| || ||||||| Sbjct 564588 AACTCCCCATTTTTGATATTCGCCGACTTTCTTCTCGAAGAAATTAGTCTTTCCTTCTAG 564529 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATT 4336 |||||| | ||||||||| || || ||||| Sbjct 564528 CGAAATTTGTTCCATAAAGTCGAATGGATT 564499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044176736986