Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fopius_20arisanus_20[refseq_20GCF_5F000806365.1_202014-12-23] 1,042 sequences; 153,631,861 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq37 168 2e-36 seq17 159 8e-34 seq425 150 4e-31 seq7 145 2e-29 >seq37 Length=1171872 Score = 168 bits (186), Expect = 2e-36 Identities = 161/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || ||||| |||||||| ||||| || || ||| Sbjct 188667 CAAATATTCGTAAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGGCTTCTGAC 188726 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| ||||||||||| ||||| ||||| ||||||||| Sbjct 188727 ACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGACCAGCAA 188786 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || ||||| | || |||||||| |||||| | ||||| || | Sbjct 188787 CGTCTTATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCAGATTACAATATT 188846 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 188847 CAAAAGGAATCTACTCTTCA-CTTG 188870 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || |||||||| |||||||||||||| || ||| ||| ||| Sbjct 189123 CAGATATTCGTAAAGACACTTACAGGAAAGACGATCACCCTCGAAGTTGAAGCCTCTGAC 189182 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| |||||||||||||| || || || |||||||| Sbjct 189183 ACAATTGAAAATGTCAAAGCCAAGATACAGGACAAAGAAGGCATTCCACCAGACCAGCAG 189242 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | || |||||||| |||||| | || || || || Sbjct 189243 CGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGAAGAACTCTTTCGGACTACAATATC 189302 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || ||||| || || || ||| | ||| | | ||||| Sbjct 189303 CAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTCTCAG 189340 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || ||||| || || || ||||| || || ||| Sbjct 188895 CAAATATTCGTAAAGACTCTGACTGGCAAAACCATTACACTGGAGGTTGAGGCATCTGAC 188954 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| |||||||| || |||||||| ||||| || || || || Sbjct 188955 ACCATCGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGTATCCCACCAGATCAACAG 189014 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| ||||| | || |||||||| |||||| ||||||| || | Sbjct 189015 CGTTTGATCTTTGCCGGTAAACAATTGGAGGATGGAAGAACTCTTTCCGATTACAATATT 189074 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || || || ||| Sbjct 189075 CAAAAAGAATCCACCCTCCACCTCGTT 189101 Score = 131 bits (144), Expect = 4e-25 Identities = 122/154 (79%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || || ||||| || || ||||| ||||| ||||||||||| ||||| ||||| ||| Sbjct 188493 TCTGATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATTCCTCCAGAC 188552 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 |||||||| ||||||||||| || || ||||| || ||||| || |||||| | ||||| Sbjct 188553 CAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAGGATGGCAGAACTCTTTCAGATTAC 188612 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||| | ||||| ||||| || || || |||| || Sbjct 188613 AACATTCAAAAGGAATCGACTCTTCA-CTTGGTT 188645 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||||| || ||||| || ||||| || || || || ||| || Sbjct 189351 CAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACACTTGAAGTAGAGGCCTCTGAT 189410 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||| || || || |||||||| || |||||| Sbjct 189411 ACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCAGCAA 189470 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| || || ||||| || ||||| | || || ||| | Sbjct 189471 CGTTTGATCTTCGCTGGTAAACAACTGGAGGATGGCAGAACTCTCTCAGACTACAACATT 189530 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || || | ||| | | |||||| Sbjct 189531 CAAAAAGAATCGACCCTTCACTTGGTTCTTCGTCTCAGA 189569 >seq17 Length=1605837 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || |||||||| ||||| |||||||| ||||| || |||||| Sbjct 83760 CAGATCTTCGTCAAGACCCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCGTCAGAC 83701 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| || || ||||||||||| ||||| || || |||||||| Sbjct 83700 ACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATTCCCCCAGACCAGCAG 83641 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||||||||| || || ||| | |||||| | ||||| ||| || Sbjct 83640 AGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTACAACATC 83581 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 83580 CAGAAGGAGTCTACCCTCCA-CTTG 83557 Score = 154 bits (170), Expect = 4e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||||||||| ||||| |||||||| ||||| || |||||| Sbjct 83175 CAGATCTTCGTCAAGACTCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCTTCAGAC 83116 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || || |||||||| || || || || || |||||||| Sbjct 83115 ACCATCGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGGATTCCCCCAGACCAGCAG 83056 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||||||||| || || ||| | || || | ||||| ||| || Sbjct 83055 AGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACACTCTCTGATTACAACATC 82996 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || ||||| || || || Sbjct 82995 CAGAAGGAATCCACTCTTCA 82976 Score = 154 bits (170), Expect = 4e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||||||||| ||||| |||||||| ||||| || |||||| Sbjct 83532 CAGATCTTCGTCAAGACTCTCACAGGGAAAACCATCACCCTTGAGGTCGAGGCTTCAGAC 83473 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || || |||||||| || || || || || |||||||| Sbjct 83472 ACCATCGAAAACGTCAAGGCTAAAATCCAGGACAAGGAGGGGATTCCCCCAGACCAGCAG 83413 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||||||||| || || ||| | || || | ||||| ||| || Sbjct 83412 AGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACACTCTCTGATTACAACATC 83353 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || ||||| || || || Sbjct 83352 CAGAAGGAATCCACTCTTCA 83333 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||||||||| ||||| || ||||| ||||| || |||||| Sbjct 83988 CAGATCTTCGTCAAGACTCTCACAGGGAAAACCATTACCCTTGAGGTCGAGGCGTCAGAC 83929 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| || || |||||||| || ||||| || || |||||||| Sbjct 83928 ACTATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAG 83869 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| ||||||||||| || || ||| | |||||| | ||||| || || Sbjct 83868 AGATTGATTTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGATTACAATATC 83809 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 83808 CAGAAGGAGTCTACCCTTCAT 83788 Score = 143 bits (158), Expect = 6e-29 Identities = 158/210 (75%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||||||||| || || || || || |||||||| ||||| || Sbjct 84450 AAAATGC---AGATATTCGTGAAAACACTGACGGGCAAGACCATCACCCTAGAGGTTGAG 84394 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || ||||||||||| || || |||||||| || ||||| || || Sbjct 84393 GCTTCGGATACTATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCA 84334 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || | |||||||| ||||||||||| || || ||| | |||||| | ||| Sbjct 84333 GACCAGCAGAGATTGATCTTCGCTGGAAAACAGCTGGAGGACGGACGCACTCTTTCTGAT 84274 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| |||| || || || || || ||| Sbjct 84273 TATAATATCCAGAAGGAGTCTACCCTTCAT 84244 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || |||||||| ||||| || ||||| ||||| || |||||| Sbjct 84216 CAGATCTTCGTCAAGACCCTCACAGGGAAAACCATTACCCTTGAGGTCGAGGCGTCAGAC 84157 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| || || |||||||| || ||||| || || |||||||| Sbjct 84156 ACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAG 84097 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| || | |||||||| | || || | ||||| ||| || Sbjct 84096 AGATTGATCTTCGCTGGAAAGCAATTGGAAGATGGTCGCACACTCTCTGATTACAACATC 84037 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 84036 CAGAAGGAGTCGACTCTTCAT 84016 >seq425 Length=33725 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || || || ||||| |||||||||||||| || || ||| Sbjct 29918 CAGATCTTTGTTAAAACCCTAACGGGGAAAACCATCACCCTCGAGGTAGAGGCTTCCGAC 29859 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| || || |||||||| || ||||| || || ||||| || Sbjct 29858 ACAATCGAAAATGTCAAAGCCAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAACAG 29799 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || |||||||| || || ||||||||||||||| | ||||| | ||||| ||| | Sbjct 29798 AGGCTGATCTTCGCTGGTAAGCAGCTCGAAGATGGACGCACTCTCTCTGATTACAACATT 29739 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||||||||| || |||| Sbjct 29738 CAGAAGGAATCAACACTTCA-CTTG 29715 >seq7 Length=2059422 Score = 145 bits (160), Expect = 2e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || ||||| || |||||||| ||||| || || || Sbjct 739938 CAGATTTTCGTCAAGACTTTGACGGGAAAGACTATCACCCTTGAGGTTGAGCCTTCTGAT 739879 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 739878 ACCATCGAAAATGTCAAAGCCAAGATTCAGGATAAAGAGGGAATTCCTCCAGACCAACAG 739819 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| || ||||| ||||| ||||| | ||||| | ||||| ||| || Sbjct 739818 CGATTGATTTTCGCTGGGAAACAACTCGAGGATGGGCGTACTCTCTCTGATTACAACATC 739759 Query 178104 CAAAA 178108 ||||| Sbjct 739758 CAAAA 739754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203715129436148