Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq122 187 3e-42 seq83 122 9e-23 >seq122 Length=4874392 Score = 187 bits (206), Expect = 3e-42 Identities = 147/176 (84%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 63564 CTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 63623 ||||||||||||||||| | || ||||| ||||||||||| || |||| ||||||||| Sbjct 3215644 CTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAA 3215703 Query 63624 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 63683 || || ||||||||||| || || |||||||||||||||||||| ||||| ||||| || Sbjct 3215704 CGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACC 3215763 Query 63684 GCATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 63739 || |||||||| |||||| | | ||| ||||| |||||||| || ||||| || || Sbjct 3215764 GCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTC 3215819 Score = 114 bits (126), Expect = 1e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 63557 TTACAAACTTTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 63616 ||||| || | ||| |||||||| | ||| || || |||||||||| |||||| || Sbjct 1181308 TTACATGCTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGA 1181367 Query 63617 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 63676 ||| || || || ||||| || || || || ||||| | |||||||||||||||||| | Sbjct 1181368 GTTGAAACGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTC 1181427 Query 63677 CTTAACTGCATCTTCCAGAGTTTCATGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 63736 | | || || ||| ||||| | || ||||| ||||| ||||| ||||| || Sbjct 1181428 TTCCATCGCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCC 1181487 Query 63737 TTCAAT 63742 |||||| Sbjct 1181488 TTCAAT 1181493 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 141671 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 141730 ||||| || || || || ||||||||||| | |||||| |||| ||||| ||| || Sbjct 2806277 TTCAGCTGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTC 2806218 Query 141731 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 141790 |||| || || || |||| ||||||| |||||| || || || | || || || Sbjct 2806217 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCA 2806158 Query 141791 CCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAA 141850 ||||| || | || ||||| || || || || || || ||||| || || || | || Sbjct 2806157 CCGCCGCGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAAC 2806098 Query 141851 GGAATAACACCAGTATGGCGTACTTCACC 141879 ||||| || || ||| | ||||||| Sbjct 2806097 GGAATGCAGCCGGTGTGGAATGCTTCACC 2806069 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 72290 TTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CC 72348 ||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| || Sbjct 4690227 TTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCC 4690168 Query 72349 ATTATACGATATCCGCA 72365 |||||||||| ||||| Sbjct 4690167 ATTATACGATGCCCGCA 4690151 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 72290 TTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CC 72348 ||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| || Sbjct 4697378 TTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCC 4697319 Query 72349 ATTATACGATATCCGCA 72365 |||||||||| ||||| Sbjct 4697318 ATTATACGATGCCCGCA 4697302 >seq83 Length=912621 Score = 122 bits (134), Expect = 9e-23 Identities = 286/432 (66%), Gaps = 0/432 (0%) Strand=Plus/Minus Query 141676 TTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAA 141735 ||| || || ||||| | ||||| | ||||| |||| || || ||||||||||| Sbjct 580174 TTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACCACGGTTATTTTTCAG 580115 Query 141736 AACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 141795 || | | |||||| |||||| ||||| ||||| ||| | || || || || || Sbjct 580114 GACTAATAAGCTTTCAATTTCCAAGTGCCACATAGGGTAAAACAGTGTCGCGGCACCCCC 580055 Query 141796 ACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAAT 141855 || | || || || || || ||||| || || ||||| || ||||| | || || || Sbjct 580054 GCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGTGTTTGTAGAACGGGAT 579995 Query 141856 AACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACC 141915 | ||| |||||| ||||||| | || ||| |||||||| || Sbjct 579994 ACAACCGGTATGGAAAGCTTCACCACCACGGATTGGGCTGCCTAGCGCACGAATACGGCC 579935 Query 141916 AACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCAGAAGCCTT 141975 | | || ||||| || || ||||||| || | |||| ||| || | | ||||| Sbjct 579934 AGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACGATAGCACTAGAAGTGGC 579875 Query 141976 ATTGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACATGAACTAAACTGTCGAGT 142035 |||||||| | || ||| || ||| |||| || ||||| || || || ||||| Sbjct 579874 GTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCATGAGCTGAATTGGCGAGT 579815 Query 142036 CGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTTGATACTGC 142095 ||| || || |||||||| || || || || || ||||| | || || || || Sbjct 579814 CGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATTTTAAAGGTCGACACGGC 579755 Query 142096 TTCATAAAAACG 142107 |||||||| || Sbjct 579754 ATCATAAAAGCG 579743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540319296441240