Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_000902.1 Length=60942 Score E Sequences producing significant alignments: (Bits) Value seq1959 107 7e-19 seq122 102 3e-17 >seq1959 Length=43063 Score = 107 bits (118), Expect = 7e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 20610 CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 20669 |||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||| Sbjct 8111 CGGCCCTTTAGCTCAGCGGTTAGAGCTTGCGACTCATAATCGCCAGGTCACTGGTTCAAA 8170 Query 20670 TCCAGCAAGGGCCACCA 20686 ||||| ||||| ||||| Sbjct 8171 TCCAGTAAGGGTCACCA 8187 Score = 87.8 bits (96), Expect = 7e-13 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 27192 ACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCG 27251 || || || ||||||||| |||||||| ||||||||||| ||||| ||||| ||| | Sbjct 9628 ACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACA 9687 Query 27252 AGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGT 27311 | ||||||||| ||||| | ||| || || |||| || || ||||| | ||| Sbjct 9688 AAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGC 9747 Query 27312 CGTAAGCGCCTGCGGATC 27329 || ||||| |||| ||| Sbjct 9748 CGCAAGCGGTTGCGCATC 9765 >seq122 Length=4874392 Score = 102 bits (112), Expect = 3e-17 Identities = 147/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 57498 CTCTTACTTCTCAGATTCGTAGTCTACGAAGACAGCGACCTCCGTCTGACCGGTTCGGAT 57557 ||||||||||| | ||| || | | || |||| ||||| | ||||| ||||| Sbjct 2888484 CTCTTACTTCTGCGGGTCGCAGGCCATAAACGCAGCCACCTCTGCGATACCGGCGCGGAT 2888543 Query 57558 TCGCACCTCGCAGAGGTCTTTCCTCGTTACCAGTGCCGTCACT-ATGACGGTTAAACAGA 57616 |||||||| || ||||| |||||||| ||||| || | || | | || | |||| Sbjct 2888544 CCGCACCTCACACAGGTCCTTCCTCGTCACCAG-AACGGCGCTGAGCGCCGTCATGCAGA 2888602 Query 57617 TGACGATCAGGGCGATTAACATCGCCTTTTGCTGCTTCATAGCCTGCTTCTCCTTGCCTT 57676 ||| || | |||||| || |||||||| ||||| ||||| | ||| |||||||| ||| Sbjct 2888603 TGATAATAATGGCGATAAAGATCGCCTTGTGCTGTTTCAT-GGTTGC-TCTCCTTGTCTT 2888660 Query 57677 TCGGCACGTAAGAGGCTAACCT 57698 || | |||||| |||||||| Sbjct 2888661 GCGACGTGTAAGACGCTAACCT 2888682 Score = 98.7 bits (108), Expect = 4e-16 Identities = 82/98 (84%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 20595 TTATTATCCTGCGCCC--GGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCG 20651 |||| |||||||||| ||||| ||||||||| ||| ||||| |||||||||||||| Sbjct 217266 TTATAATCCTGCGCCTCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCG 217207 Query 20652 CCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 20689 | |||||||||||||| |||||| ||||||||| || Sbjct 217206 CTTGGTCGCTGGTTCAAGTCCAGCTGGGGCCACCAGAT 217169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194878305213424