Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq4 149 5e-31 >seq4 Length=4567600 Score = 149 bits (164), Expect = 5e-31 Identities = 241/344 (70%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 101749 ATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCAC 101808 ||| || |||||||| ||||| |||| | |||| |||||| |||||||||||||| || Sbjct 989155 ATTTGTTACATGAGCTATCATATAAGTAAGGAGAGCATAGCTGGCAATGTTAAATGGGAC 989096 Query 101809 TCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGAC 101868 || | |||||||| ||||| |||||||| |||||||| || || | |||| || Sbjct 989095 ACCCAGTCCCATATCTGCTGACCTTTGATAGAGTTGACAAGACAGTTCACCATTTGCCAC 989036 Query 101869 ATAAAATTGACTTAATAC-ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACAT 101927 ||||||||| | || | ||| |||||||| || ||||||| || | ||| | || Sbjct 989035 ATAAAATTG-CACAAGGCAATGGCAAGGCGGTAAAGCCATTTTTGGGACGTCAACAGGAT 988977 Query 101928 TCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACT 101987 |||| |||||||| | || ||||| || ||| | ||||||| || |||| | Sbjct 988976 TCCATGCACACATGAGAATTCTTCTGTCATCAGGTCTATTTTTTATTTTACTGATCACAT 988917 Query 101988 GTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTC 102047 | | ||||||| |||| | || || | | || |||||| || | Sbjct 988916 CACTCAGCTGGTCAATACCTTTGTTGCTGTAGTCAGTAAACATATCTACATATTCAGCAC 988857 Query 102048 CGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCT 102091 | ||||| | ||||||||||||||| ||||| || | ||| ||| Sbjct 988856 CAAAATGGCGCCACTGAAATCCATATACAGGACCCAAATCACCT 988813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361223625583013