Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq742 205 7e-49 seq1214 192 4e-45 seq122 113 3e-21 >seq742 Length=32635 Score = 205 bits (226), Expect = 7e-49 Identities = 434/644 (67%), Gaps = 4/644 (1%) Strand=Plus/Minus Query 5138 ATCACCCGTCGGCGTGACACGCCGCCGCTGCGGTCGGTGAAGCGCATCGGGTTATTGTTC 5197 ||||| || |||||||| | || |||||||| ||||| || |||||||||||||| || Sbjct 800 ATCACTCGACGGCGTGAAATACCTCCGCTGCGATCGGTAAATCGCATCGGGTTATTATTA 741 Query 5198 ACGGCCAGAATCACCGCCGGGATGTGCGTGGAGTACGCATCCCGGTATTTCGGGTCAACG 5257 ||| | || ||||| || ||||| | || |||||||| ||||| |||||||| Sbjct 740 CTGGCAATGATAACCGCTGGAATGTGAGCCGAATACGCATCTTTATATTTAGGGTCAACC 681 Query 5258 GACACCGCATCGCCGCCGGTGATGGCCTTGAGTCCGGCACCGTCGCCGCTCCATTTTTCC 5317 ||||| |||||||| || || || || || | || || || || || |||||| || Sbjct 680 GACACGGCATCGCCCCCTGTTATCGCTTTAATCCCTGCGCCATCACCTGACCATTTCTCT 621 Query 5318 TGGTCCGGCAGGCGTATCAGTGAGAAGCCAGTTAACGCGGCACGTTCACGCGGGGATTCC 5377 ||||| || | | || ||||| || | | |||||||| |||| ||| Sbjct 620 TGGTCAGGTAACAGAATAAGTGAACGCCCCACGATTGGCGCACGTTCGCGCGATAGCTCC 561 Query 5378 AGCGTCTCGATGGTGGCCGACGTGGCGTTATCCTCCCCGGCCAGCAGGGTGGCTATTTCG 5437 | | ||||| | || || || ||| || | || ||||||| |||||||||||| Sbjct 560 AAGTTTTCGATTTTTGCTGAGAAGGTGTTGTCTTTACCTGCCAGCATGGTGGCTATTTCA 501 Query 5438 GCCATGATACTTTTGCCGCTGCCGCCGGGACCGGTCACCTCCAGAAAGAGCTGCCAGTCG 5497 | | ||||| || ||||||| || || || | ||| || || | |||||| || Sbjct 500 CTTAACAGGCTTTTACCCGTGCCGCCTGGTCCCGTTATCTCAAGGAATAACTGCCAATCA 441 Query 5498 TAGCGGTTTGCCAGCACCATAAACAGTGCAGCCAGAATCACGTCGCGTTTTTCCGCACGG 5557 |||||||| || ||||||||||| | || || | ||| || || || || | | | Sbjct 440 TAGCGGTTAGCGAGCACCATAAATAAGGCCGCTAAAATAACATCACGCTTAACTGTGTTG 381 Query 5558 CCACCGGCGGCACGGTCAAGCCAGCGCCAGAAGGCGGGGGCGTGGGTTTCCAGCGTTTCA 5617 ||||||| || | ||| ||| || || || | ||||| | || || Sbjct 380 TTTGCGGCGGCGAAGTTTAACCATTTCCAAAAATGAGGCGCATTAGTTTCTATCGACTCT 321 Query 5618 CCGTCCACCGGCGGGGTGAAATCCACATCGCACAGGGTGCGCATCCAG-TGTGACGGACT 5676 || | |||| |||| | | |||| | ||| |||| |||| | ||||| || Sbjct 320 TCGGGTAATGGCGTGGTGTAGGCGACATTATTGACGGTACGCAACCAGTTTTGACG--CT 263 Query 5677 G-TGCGGGTGGAACGTGCCGTTCTGCGTGTCGAGCACGCCGTTACGAAAGCCAATCAGGC 5735 | ||||| | ||| |||||| || || || || || || || |||||||||||| Sbjct 262 GATGCGGTTTGAATGTGCCGGATTGGGTATCAAGGACACCATTGAGAAAGCCAATCAATT 203 Query 5736 GGCGGGAGGGGGCTTCCTGCTGCGGAATAATCAGCTTCAGGGTA 5779 |||| || || |||| |||||| || | ||| || || || ||| Sbjct 202 GGCGTGAAGGCGCTTTCTGCTGGGGTAAAATGAGTTTGAGTGTA 159 >seq1214 Length=17919 Score = 192 bits (212), Expect = 4e-45 Identities = 401/588 (68%), Gaps = 7/588 (1%) Strand=Plus/Plus Query 5399 GTGGCGTTATCCTCCCCGGCCAGCAGGGTGGCTATTTCGGCCATGATACTTTTGCCGCTG 5458 |||| ||| |||| |||||||||||||||| | ||||| ||||| || ||||| |||||| Sbjct 10879 GTGGTGTTGTCCTTCCCGGCCAGCAGGGTGCCGATTTCCGCCATCATGCTTTTCCCGCTG 10938 Query 5459 CCGCCGGGACCGGTCACCTCCAGAAAGAGCTGCCAGTCGTAGCGGTTTGCCAGCACCATA 5518 |||||||| ||||| ||||| || || | |||||||||||||||||| |||||||||||| Sbjct 10939 CCGCCGGGGCCGGTGACCTCAAGGAAAATCTGCCAGTCGTAGCGGTTCGCCAGCACCATA 10998 Query 5519 AACAGTGCAGCCAGAATCACGTCGCGTTTTTCCGCACGGCCACCGGCGGCACG-GTCAAG 5577 || || | || || || || | || | || || | ||| || ||| || Sbjct 10999 AAGAGCACCGCGAGGATGCGCTCCTGCTTGT-CGTGGTTCCGTCCTGGGCCCGCGTC-AG 11056 Query 5578 CCAGCGCCAGAAGGCGGGGGCGTGGGTTTCCAGCGTTTCACCGTCCACCGGCGGGGTGAA 5637 ||| ||||||| || ||||| | || |||| || | ||| |||| | Sbjct 11057 CCACTTCCAGAAGTTCGGCGCGTGCTCCGCGAGGCTTTCGCCCGGCTTCGGTACGGTGTA 11116 Query 5638 ATCCACATCGCACAGGGTGCGCATCCAGTGTGACGGACTGTGCGGGTGGAACGTGCCGTT 5697 ||| | || | ||||| ||||| | | ||||||| || |||||| | Sbjct 11117 GCTCACGCTGTTCACCGAGCGCAGCCAGTTTTCCCTGTCGTGCGGGCTAAAGGTGCCGGT 11176 Query 5698 CTGCGTGTCGAGCACGCCGTTACGAAAGCCAATCAGGCGGCGGGAGGGGGCTTCCTGCTG 5757 ||||| ||| |||||||||||||||||||||||||| | ||| || ||| Sbjct 11177 GCCGGTGTCATACACCCCGTTACGAAAGCCAATCAGGCGGCGCGCCGGGTTGCCCATCTG 11236 Query 5758 CGGAATAATCAGCTTCAGGGTATCCACCACGGAGGCCACCTTCCCGGAGGAGAACGGCGC 5817 ||| | || ||||||||||| |||| | | | | | ||| ||||||||| || Sbjct 11237 CGGCACCATAAGCTTCAGGGTGTCCAGGATGCTGTTAATCCCGGCGGCGGAGAACGGGGC 11296 Query 5818 ACGCAGACGCTGAAACAGCCCGGCCACATCCCGG-GCAAAGTCCTGTGGCGGCAGCACCT 5876 || | |||||||||| |||| | |||||| ||| || ||| | |||| ||| Sbjct 11297 GCGGGCAGTCTGAAACAGCGCGGCAATCTCCCGGCGCAGCGT-CTGCTGGGGCACGACCA 11355 Query 5877 TCCAGACACCATTTTCATAGCGGGACAGAAGCT-GGCCGTTGGCATCGACCGCGAGCGCC 5935 |||| |||| || ||||||||| | | || || ||| | || || ||||| Sbjct 11356 GCCAGGCACCGTTCTCATAGCGGCAGATTTCCTCCCCCACCGGCGGC-ACGGCCAGCGCG 11414 Query 5936 TCGCCGTAATGCTCATAGATACGCATGGCCTTTTCGCTGGTACTCATG 5983 | |||||| ||| || | || ||||||||||||| |||||| Sbjct 11415 TTGCCGTAGTGCGCAACCAGCAGCTCCGCCTTTTCGCTGGCGCTCATG 11462 Score = 168 bits (186), Expect = 5e-38 Identities = 362/533 (68%), Gaps = 55/533 (10%) Strand=Plus/Plus Query 8177 GGACACCTCCACCACCGGCAGACGGGCAGCAAGGGAGAGCACATAGTCACGGACAAGGGA 8236 || |||| || || |||| || | |||| || |||| || ||||| || ||| Sbjct 10246 GGCCACCGCCTTAACGGGCACGCGCCCGGCAAACGACAGCATGTAATCACGCACCAGGCT 10305 Query 8237 ACGGCGGGCACTGCGTTCATCACCGGCGACGGTGCGAAGCATACAGATACGGGGATGACG 8296 ||||||| |||| || || |||| |||||||| ||||| ||| ||||| || || Sbjct 10306 CAGGCGGGCGGTGCGCTCGTCGGCGGCCACGGTGCGCAGCATGCAGGGACGGGCAT--CG 10363 Query 8297 GTC--TGCGCGACGGACAGCCGCAAACACAAAGACAAATTCAGGGTGTGAGGGGGTAAGG 8354 || || ||||||||| || ||||| | |||| ||||| ||||| | || | | Sbjct 10364 GTGCGTGAGCGACGGACGGCGGCAAAGATAAAGGTGAATTCGGGGTGAGCGGTATGATGA 10423 Query 8355 GTTGTAGCCATGATGGCAGCCTCCTGTGAATAGCAAAT-AACGCTATCGCCGGAGTTCTC 8413 |||||||||||||||| |||| | |||| | || |||| | ||||||||| Sbjct 10424 ACCGTAGCCATGATGGCAGTCTCCAAGGT-TAGCTGTTTAAAGCTACCACCGGAGTTCCT 10482 Query 8414 ACGCTCGATGGCGATAGCCCAGACGGGGGTGAGAATACCGGCTTCACAGGATACCGGCCA 8473 || ||| || | |||||| ||||||||| |||||||||| | ||| |||||||| Sbjct 10483 ACACTCATGGGTGGTAGCCCGGACGGGGGTAGGAATACCGGCAACCTTGGAAACCGGCCA 10542 Query 8474 GCCCGGAGGCTGCCCCGCCTGAGCTACCATTGACTCTG-CGGCATAATGAGCGGACGCGG 8532 ||||| ||||||||||||| | || |||||| || | | ||| |||| ||| || | Sbjct 10543 GCCCGAAGGCTGCCCCGCCCGGGCCACCATT-ACGCAGACGGTATAA----CGG-CGTGA 10596 Query 8533 GCAGGATGCACGGAATGCCATCTGCACGACTGACCACACACCACACCATAATCTGGCGCT 8592 | | || | ||| || | ||| || || Sbjct 10597 GAA--------------CCGT-TGCCCG------------------TAAAAT-GGGTGCA 10622 Query 8593 CTGTGGCATTGATTGCGACACaaaaaaaGACGCGTGGCGCGTCATATGTCGCCTGTGAAT 8652 ||| ||| || |||||||||||| ||||||||||||| | ||||||| || | Sbjct 10623 CTGAGGC---GA---AGACACAAAAAAACACGCGTGGCGCGTGCTGTGTCGCC-AAGATT 10675 Query 8653 -TGCTCGGGTTCTCACGCCCGGCTGCCGATTTTGCGGCAGGCGAAAAACTATA 8704 |||||||||| |||||||||||||||||||||||||| | ||||||||| Sbjct 10676 AAGCTCGGGTTCCTACGCCCGGCTGCCGATTTTGCGGCAGCGGGAAAACTATA 10728 Score = 123 bits (136), Expect = 2e-24 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 6755 ACCTTTTCAACCAGTTTCAGGCCGTCACCGGCACCACACTGATTGCAGTACCAGGTGCCG 6814 |||||||| ||||| ||||||||||||||||| || ||||| ||||| |||||||||| Sbjct 9420 ACCTTTTCCACCAGGTTCAGGCCGTCACCGGCCCCGCACTGGTTGCACAGCCAGGTGCCG 9479 Query 6815 CGCCCCTCCCTGTCATCAAAACGGAAGCGGTCACTCCCGCCACAGACCGGACAGGGCTGA 6874 || || || | ||| ||||| || |||||||| | ||||| ||| ||||||||||| | Sbjct 9480 CGACCGTCGCGGTCGTCAAAGCGAAAGCGGTCCTTGCCGCCGCAGGCCGGACAGGGCCCA 9539 Query 6875 TGA 6877 ||| Sbjct 9540 TGA 9542 >seq122 Length=4874392 Score = 113 bits (124), Expect = 3e-21 Identities = 207/303 (68%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 2698 TTACGGTTCATATCCAAATAATCAGCCCACCACTGCATCATTAAACGC----CGCTCATC 2753 || ||| |||||||| |||||| | |||||| |||||||| ||| || |||| Sbjct 2498846 TTCCGGCACATATCCAGATAATCCGACCACCATTGCATCAT----CGCTTTACGGGCATC 2498791 Query 2754 CAAATGCTCGGAGGTATGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAG 2813 | || || | ||||||| || ||||| || || | |||||||| ||| |||| Sbjct 2498790 GAGATATTCTGCTTTATGGATGTAAGCCGCTCGAACGCTGTTACGCTCCTGGTGACTCAT 2498731 Query 2814 TTGCCTCTCTATCGCGTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCAT 2873 |||| || | ||| || | ||||| || |||||| || |||| || ||||| Sbjct 2498730 CTGCCGTTCAACCGCATCCTGTGCCCATAGGCCAGACTCCATCAGGGCACTACAGGCCAT 2498671 Query 2874 AGTCCTAAACCCATGCCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGC 2933 | || || || || || || | || |||| || ||||| |||||| |||| ||| Sbjct 2498670 TGCCCGTAATCCGTGACCGCAGATTTCATTTTTTGTGTCATAACCCATCAGGCGCAGTGC 2498611 Query 2934 GCTGTTTACCGTGTTTTCACTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAG 2993 |||| ||||||||||| | ||| ||| | | |||||| |||||||| | ||| Sbjct 2498610 CTTGTTGACCGTGTTTTCGCACATCGGTTTATACGGATTATGATCACCCGGAAATACCAG 2498551 Query 2994 CTC 2996 ||| Sbjct 2498550 CTC 2498548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37078987276816