Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq45 116 4e-21 seq93 109 7e-19 >seq45 Length=1811775 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 |||||||| || || |||| |||| |||| ||||| || || || | | ||| |||||| Sbjct 850495 TTGTTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATA 850554 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298 |||||||| |||| |||||| || || | ||||| ||||| ||||||||||| | | Sbjct 850555 ATACCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATA-CAGTG 850613 Query 54299 ATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 | || | | ||| || || || || ||||| || || || || ||| | || || Sbjct 850614 AATGTTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTC 850673 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 54408 || ||||| || ||||||||||| |||| || || || || ||||| Sbjct 850674 GTAAATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCAACTAGA 850724 Score = 114 bits (126), Expect = 2e-20 Identities = 208/300 (69%), Gaps = 11/300 (4%) Strand=Plus/Plus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG---ACAATTACT 53644 ||||||| |||||||| || | ||| || |||||||| |||||| || ||| | || Sbjct 849755 TCTGGAACTGGATAATAGTTCACATCAATTATTTTATTCAGGTTTTTGGTCACAGT--CT 849812 Query 53645 TTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTT 53700 ||| | || || ||||| || | ||| || | ||||| || | ||||||||||| Sbjct 849813 TTGTC-ACCTCTTTCAGCTTTACAAAGTCGTAGGTTTTGTCAGGCT-TCACAAACATGTT 849870 Query 53701 CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 53760 | |||| ||||||| ||||||||| || | || | | | ||| | | || Sbjct 849871 AACGGCAACTGATGCCAAATTACAAACAGCAATTTCTGTCGGCGAGGAATACTCAACAAT 849930 Query 53761 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820 ||||||||||||||| || | || || ||||||| ||| || ||||| || ||| Sbjct 849931 CTCAGTGCAAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCGGTT 849990 Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880 || ||||| || || | ||| | || || |||||||| | || || || ||||| || Sbjct 849991 GCAAGCATCTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGAGACTCAATAATGGC 850050 Score = 111 bits (122), Expect = 2e-19 Identities = 119/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 52886 AAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 52945 |||||||| ||| || || |||| | || || |||||||||||||| | |||||| Sbjct 848718 AAATGCATGGATGTGAGCTTCCCATAATTTGGCTCAGCTATATGGATATTTAGTGATTGA 848777 Query 52946 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 53005 |||||| |||||||| || || || |||||||||||||| | || || |||| |||| Sbjct 848778 GATTGATCAATGAAGGCCCCTCTATCAGCAGCCATTTTTATAACAGTTTTCTGTGAAATT 848837 Query 53006 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTT 53039 ||||||| ||||| || | ||| ||| || |||| Sbjct 848838 TCCCAAACTGTTTTGTATAGCTC-CTTGATTTCTT 848871 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || || || ||||| || ||||| |||| ||||||||||| || || | || | | Sbjct 849141 ACCTGGAACTCTCCTGATAATACCCTCCTTGTGTAAATATTTGATGTGTAGGCCTCAATA 849200 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||||||| || || ||||| ||||| ||||||||||| | ||||||| Sbjct 849201 GACTCATTATTACCCAAAATCTGCGCTGTTGAGGCAGTTGGCATAGGTGCAAGCAATAAA 849260 >seq93 Length=974399 Score = 109 bits (120), Expect = 7e-19 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||| ||| || || ||| || || || || ||||| || || | ||| | Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 ||||||| || |||| ||||| |||||| ||||| || || || || || ||||||| Sbjct 914687 TAAGCCAGAAAATGGCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGG 914746 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 24333 |||| | || || || | ||| ||||| |||||||| |||||||||| Sbjct 914747 CAATTACTCGCTCAGCAAACGTGGCAGACTCATGAGCAATCCACTTCATGGCCCAATCGG 914806 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||||| || ||||| || | ||| || || |||||||| | ||| Sbjct 914807 CCTTCTTCTTCACACATGGGAGTGTTTCAATGGCATTAAATAAATA 914852 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/138 (74%), Gaps = 5/138 (4%) Strand=Plus/Plus Query 23790 TAAAAGTCAACATCTAAAGAAAAATGATTGTC----TTCTTGAGACATAACTCCCATTTT 23845 ||||||||| ||||||||| ||| ||| || || || || ||| |||||| || Sbjct 914091 TAAAAGTCAGCATCTAAAGTAAACACATTCTCCGCCTTATT-AGCCATCACTCCCCACTT 914149 Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 || |||||||| || ||||| || |||||||| || ||||||||||| || | || Sbjct 914150 CTGATATTCACCAACTTTCTTTTCAAAGAAATTAGTCTTGCCTTCTAATGAGATGTGCTC 914209 Query 23906 CATGAAATCGGATGGATT 23923 |||||| || |||| || Sbjct 914210 CATGAAGTCAAATGGGTT 914227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593675119020240