Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3962 127 2e-24 seq43 113 5e-20 seq79 105 7e-18 seq275 96.9 4e-15 seq3929 95.1 1e-14 seq93 86.0 6e-12 seq17 84.2 2e-11 >seq3962 Length=6517 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || || || || | Sbjct 187 ATGCAGATTTTCGTCAAGACCCTTACAGGCAAGACCATCACTCTGGAGGTTGAGCCCTCG 246 Query 40750 GA---CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 || || || | |||| |||||| || || | |||||||||||||||||| | || Sbjct 247 GATTCCATCGAG--AACG-TCAAGGCTAAGATCCAGGACAAAGAGGGCATCCCCCCAGAT 303 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| ||| ||||| || || || |||| |||||| | |||||| Sbjct 304 CAGCAGCGACTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCTTGTCTGACTAC 363 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| || |||| || ||||| || Sbjct 364 AACATCCAGAAAGAATCCACCCTCCATCTTGT 395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | || ||||| |||| |||| ||| ||||| || || || Sbjct 52 GACAAGGAGGGCATCCCCCCAGATCAGCAGAGACTGATCTTCGCCGGCAAGCAACTTGAG 111 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | |||||| | ||||||||||||||||| || | || || ||||| || Sbjct 112 GATGGCCGCACCTTGTCTGACTACAACATCCAGAAAGAATCTACCCTCCATCTTGT 167 >seq43 Length=2082672 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||| ||||| ||||| || | || || ||| || | Sbjct 901073 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACCATTACTCTGGAAGTTGAACCCTC 901132 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | |||| | |||| ||||| | |||||||| ||||||||| | || | Sbjct 901133 TGATTCTATTGAGAACG-TAAAGGCCAAAATCCAAGACAAAGAAGGCATCCCCCCAGATC 901191 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || ||||| ||||| || || | |||||| | ||||||| Sbjct 901192 AGCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCTGACTACA 901251 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||||||||||| |||| | ||||| || ||||| ||| | || || Sbjct 901252 ATATCCAGAAGGAGTCCACTTTACATCTTGTCTTGCGTTTGCGCGGTGG 901300 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || || || || | Sbjct 900846 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTTGAGCCCTCG 900905 Query 40750 GA---CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 || || || | |||| |||||| || || | || ||||||||||||||| | ||| Sbjct 900906 GATTCCATCGAG--AACG-TCAAGGCTAAGATCCAGGATAAAGAGGGCATCCCCCCAGAC 900962 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | |||| || || || ||||| || || | || || | |||||| Sbjct 900963 CAGCAGAGATTGATCTTTGCCGGTAAGCAGCTTGAAGATGGCCGTACTTTGTCTGACTAC 901022 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || |||||||| |||| || ||||| || Sbjct 901023 AATATTCAGAAGGAATCCACCCTCCATCTTGT 901054 >seq79 Length=1213707 Score = 105 bits (116), Expect = 7e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 22808 CGTACGCGCCCAACAAGAGAGACTGGTTCAAGATGAAGAAAGAGCACCTGTGCGACGGCG 22867 |||||| ||| |||| | ||||| ||||| ||||||| || |||| | || ||||| Sbjct 69495 CGTACGAGCCGGGCAAGCGCCACTGGCTCAAGGTGAAGAAGGACTACCTCTTCGGCGGCG 69554 Query 22868 CGCTGGTCGACACCCTGGACCTGGTGGTGCTCGGCGCCTATTACGGCACGGGCCGCAACT 22927 | ||| |||||| ||||||||||||||||| || | ||||||||||||| || Sbjct 69555 CCATGGCCGACACGGCCGACCTGGTGGTGCTCGGAGCGTTCTACGGCACGGGCCAGAAGG 69614 Query 22928 GTCGCAAGATGTCAGTTTTTCTGATGGGCTGTCTGGACCGCGAGTCGAACGTGTGGACGA 22987 | ||| |||||| | || || |||||||| |||| | | || | ||| | Sbjct 69615 GCGGCATGATGTCCATCTTCCTCATGGGCTGCTACGACCCGGCGACGCGCCGCTGGTGCA 69674 Query 22988 CGGTCACCAAGGTGCACTCGGGCCTCGCCGACGCGGCCCTG 23028 | || |||||||| ||| |||| || ||||| | | ||| Sbjct 69675 CCGTGACCAAGGTCCACGGCGGCCACGACGACGAGACGCTG 69715 >seq275 Length=398669 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| ||||| || ||||| |||||| | || || ||| || | Sbjct 170535 AATGCAGATCTTTGTGAAAACCCTCACTGGGAAAACTATCACCTTAGAGGTTGAACCCTC 170594 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | |||| |||| | ||||||| ||||| || || |||||| | |||| Sbjct 170595 AGACTCTATTGAGAACG-TCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCCCCAGACC 170653 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || || | || || || ||||| || || | |||||| || ||||||| Sbjct 170654 AGCAGCGTCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACACTGTCAGACTACA 170713 Query 40868 ACATCCAGAA 40877 |||| || || Sbjct 170714 ACATTCAAAA 170723 >seq3929 Length=16375 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/108 (80%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 73584 AACCACGCCGTGCTGCTGGTCGGCTACGGCGTCGA---GAACGGAGTGCCCTACTGGGTG 73640 |||||||||||||| ||||| |||||||||||||| | ||| | | |||||| | Sbjct 15401 AACCACGCCGTGCTCCTGGTGGGCTACGGCGTCGACCCGTCCGGCGAGAAGTACTGGATC 15342 Query 73641 TTCAAGAACACGTGGGGCGACGACTGGGGCGAGAACGGCTATTTCCGC 73688 | ||||||| |||||| | ||||||||||||||||||| |||||| Sbjct 15341 GTGAAGAACAGCTGGGGCCAGGACTGGGGCGAGAACGGCTTCTTCCGC 15294 >seq93 Length=974399 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 ||||| ||| || || || ||||| || || || || || || ||||| || || Sbjct 915134 CATTTTATCTCCCATGTCCTTGCCTTCTTTGCTGCTTCTGATGGGATTGTCAATGAAAAC 915075 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTT 116860 | || || | ||| ||| || || ||||| | || || ||||||||||| |||||| Sbjct 915074 TTAGTGGAAAGATTCAGTCAAGAAGTTCAGGTAACAGAAGCACGGTGCTTCTATGGCTTT 915015 Query 116861 CAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 ||||| || ||||| || || ||||| |||||||| Sbjct 915014 CAGATTGCAATGGAAAATGTTCACTCAGAAATGTA 914980 >seq17 Length=3381533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 139348 CGGCTACGTGCTCGGCCTGCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGA 139407 |||| ||||| || ||| ||| ||||| |||||||||||||| |||||| || || Sbjct 1582044 CGGCAACGTGTCGGGGCTGGCGCCCGGCCGCCACGGCTTCCACGTCCACGAGAAGGGGGA 1582103 Query 139408 CGCGAGCAACGGGTGCACGTCGGCCGGCGAGCACTTCAACCCCG 139451 || ||||| || ||| | ||||||||| ||||||||||||| Sbjct 1582104 CGTGAGCACGGGCTGCGCCGCGGCCGGCGGACACTTCAACCCCG 1582147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515178864776880