Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-41 seq275 93.3 6e-14 >seq4 Length=4567600 Score = 185 bits (204), Expect = 1e-41 Identities = 252/351 (72%), Gaps = 3/351 (1%) Strand=Plus/Minus Query 205435 TTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAAT 205494 || ||||| |||| ||| || ||||||||||| | | | ||| || |||| |||||| Sbjct 989160 TTCAAATTTGTTACATGAGCTATCATATAAGTAAGGAGAGCATAGCTGGCAATGTTAAAT 989101 Query 205495 GGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTA 205554 || ||||| | |||||||| ||||| |||||||| | |||||| | || || | | Sbjct 989100 GGGACACCCAGTCCCATATCTGCTGACCTTTGATAGAGTTGACAAGACAG---TTCACCA 989044 Query 205555 TTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCT 205614 || |||| |||||| |||| ||||| ||||| |||| | |||| ||| || || Sbjct 989043 TTTGCCACATAAAATTGCACAAGGCAATGGCAAGGCGGTAAAGCCATTTTTGGGACGTCA 988984 Query 205615 ATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttattt 205674 | ||||||||| || | | || |||| |||||| |||||||||||||| | Sbjct 988983 ACAGGATTCCATGCACACATGAGAATTCTTCTGTCATCAGGTCTATTTTTTATTTTACTG 988924 Query 205675 atAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATAT 205734 || | || | | || |||| |||| || | || | ||| |||||| | |||| Sbjct 988923 ATCACATCACTCAGCTGGTCAATACCTTTGTTGCTGTAGTCAGTAAACATATCTACATAT 988864 Query 205735 TTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 | |||||||||||| ||||| ||||| ||||| || ||||| ||||||||| Sbjct 988863 TCAGCACCAAAATGGCGCCACTGAAATCCATATACAGGACCCAAATCACCT 988813 >seq275 Length=398669 Score = 93.3 bits (102), Expect = 6e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 ||||||||| || ||| | || || || || || |||||||| || ||||| ||||| | Sbjct 170532 TACAATGCAGATCTTTGTGAAAACCCTCACTGGGAAAACTATCACCTTAGAGGTTGAACC 170591 Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 || | ||| || | ||| |||||||| || || ||||| || || || || Sbjct 170592 CTCAGACTCTATTGAGAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCCCCAGA 170651 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 || || | ||||||||||| ||||| || | |||||| | || ||| | ||| || Sbjct 170652 CCAGCAGCGTCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACACTGTCAGACTA 170711 Query 124715 TAATATTCAAAAAG 124728 || |||||||||| Sbjct 170712 CAACATTCAAAAAG 170725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755396857238400