Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq302 206 7e-49 seq154 84.2 6e-12 seq1959 82.4 2e-11 >seq302 Length=239003 Score = 206 bits (228), Expect = 7e-49 Identities = 284/395 (72%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 24388 CTGATGTTTATGCTCGTCTGTATCTGCATCTTTCGCATCATCTATGCCGAACAAACCATT 24447 ||| || | | |||| ||||| || ||||| || | ||||| || | |||| | |||| Sbjct 149601 CTGGTGATGAAGCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATT 149660 Query 24448 GAGGCAATACTTGCGTGCATAAGAGCTTGTAGCTCCAGTAACTTGTGCAGAATCCATTCC 24507 || |||||||| | |||||| || || || || |||||||| || || || |||||||| Sbjct 149661 AAGACAATACTTCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCC 149720 Query 24508 TTTCTTGCTTTCTTCCTCTCGTGCAAGAGCGGTTGCCGTATGGCTGTT--TTCGCCATCG 24565 |||||||| || || || | ||| | || | |||||||| |||| ||| || || Sbjct 149721 CTTCTTGCTCTCCTCTTCCCTTGCCAAGGCACTCGCCGTATG--TGTTGATTCACCGTCT 149778 Query 24566 GTAATAGTTGCCGTGGCTTTCACGTAATACCGATCACCAATCAACACAACTTCATCGCTG 24625 ||||| ||||| || | || || || ||| || |||| |||||||| || Sbjct 149779 GTAATCGTTGCTACAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGAT 149838 Query 24626 ATTGATAAAAACAGACCATTCAGTAACGGCTTAACGCCTTCAAGAATATCTTCGCAGCTT 24685 || | || ||||| || || | || ||||| || || | ||||||||| ||| | Sbjct 149839 ATACTCAGGAAGAGACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATA 149898 Query 24686 CTGTATTTATATTTACCGAATGAGTTGTACTGATTCTTTGGCGCGTTCAGATTCTCCTGA 24745 | |||||||| |||||||| ||||||||| |||||||| ||||| || | |||| Sbjct 149899 CGATATTTATACTTACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAGTGTTCGCTGA 149958 Query 24746 ATAGCTGCCAGTCTTGCGTAAAATTCTTTGCTCAT 24780 || |||| || |||||||||||||||| ||||| Sbjct 149959 ATCTCTGCTAGCTTTGCGTAAAATTCTTTACTCAT 149993 >seq154 Length=560718 Score = 84.2 bits (92), Expect = 6e-12 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31673 ATTGCTCACATCTCAGGAAGCCTGAAGGCGATGGCGAAAGACCTGAAAACGCCTGTTATC 31732 |||||| | |||||| || |||| || |||||||||| ||||| || || || Sbjct 275575 ATTGCTGAGATCTCACGATCTTTGAAAGCCTTGGCGAAAGAACTGAATGTACCAGTGGTC 275516 Query 31733 TCCCTGAGTCAGCTTTCACGCGATGTTGAGAAGCGACCAAACAAACGCCCGACAAACGCA 31792 || | |||||| ||| | ||| |||| || | ||||| || ||| || Sbjct 275515 GCCTTATCACAGCTTAACCGCTCATTGGAGCAGCGCGCAGATAAACGGCCAGTCAACTCA 275456 Query 31793 GATTTGCGTGATTCAGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATAGG 31852 ||||||||||| |||||| ||||| ||||| || |||| ||||| | ||||| | Sbjct 275455 GATTTGCGTGAGTCAGGATCGATTGAGCAGGATGCCGACTTGATCATGTTTATCTATCGT 275396 Query 31853 GAAGCGGTATATGACGAGAACAGT 31876 || | ||| ||| |||| |||||| Sbjct 275395 GACGAGGTGTATCACGAAAACAGT 275372 >seq1959 Length=43063 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 37154 ATCGCTGACATGCAGAAGCGTCAACGTGATGTAGCAGAACTTGACGCCAGATACACAAAG 37213 ||| | |||||||||| || || || ||||| || | ||| ||||| | ||||||||| Sbjct 9631 ATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACAAAG 9690 Query 37214 GAGCTTGCTGATGCTAACGCGACTATCGAAAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37273 ||| | ||||||||||| || | || ||| |||||| || |||| || ||| || Sbjct 9691 GAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGCCGC 9750 Query 37274 AAGCG 37278 ||||| Sbjct 9751 AAGCG 9755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127011353066164