Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq275 113 4e-20 seq3962 100 2e-16 seq19 84.2 2e-11 >seq275 Length=398669 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||||||||||||||| || || |||||| |||||| ||||| |||||||| | | Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | ||||||||||| || || || || || |||||||| |||||| ||| || | | Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTCT 170606 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 | | | ||| | | || ||||| | ||| | ||||| || || || ||||| |||| Sbjct 170605 CAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAA 170546 Query 118729 AAATCTGCAT 118738 | |||||||| Sbjct 170545 AGATCTGCAT 170536 >seq3962 Length=6517 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| |||||||| || || | || || |||||| ||||| || ||||| ||| Sbjct 6288 CTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 6229 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | ||||||||||| || || || |||||||||||||| ||||| || || | | Sbjct 6228 TCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTCT 6169 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 | | | ||| | | ||| ||||| | || | || |||||||| ||||| || |||| Sbjct 6168 CAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGACAA 6109 Query 118729 AAATCTGCAT 118738 |||||||||| Sbjct 6108 AAATCTGCAT 6099 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || ||||| || |||||||| || || ||||| ||||||| Sbjct 394 CAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCGTCCTCGA 335 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | || || || ||| |||| || ||||||||||| || || |||||||| ||||| | Sbjct 334 GTTGCTTGCCGGCGAAGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCCTGGA 275 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | |||| || |||| | ||| ||||| | || | || |||| Sbjct 274 TCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTTGC 215 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || ||||||||||| Sbjct 214 CTGTAAGGGTCTTGACGAAAATCTGCAT 187 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||||| ||||| || |||||||| || || ||||| |||||| | Sbjct 166 CAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCCTCAA 107 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 | || || || ||| |||| || | ||||||||| || || |||||||||||||| Sbjct 106 GTTGCTTGCCGGCGAAGATCAGTCTCTGCTGATCTGGGGGGATGCCCTCCTTGTC 52 >seq19 Length=2947477 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| ||||| ||||| || || || | ||| || ||||| || |||||| ||| Sbjct 340559 CTTTCTGAATATTGTAGTCAGACAATGTCCTGCCATCTTCAAGCTGCTTGCCAGCGAAGA 340618 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 ||||||||||||| || || || || || |||||||| ||| || || || | | Sbjct 340619 TGAGACGCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCT 340678 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 | | || || | | ||||||||| | || | || ||||| || || || || || | Sbjct 340679 CAATGGAATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 340738 Query 118729 AAATCTGCATG 118739 | ||||||||| Sbjct 340739 AGATCTGCATG 340749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433797285589996