Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10 113 5e-20 seq95 105 8e-18 seq535 104 3e-17 seq118 104 3e-17 seq187 102 9e-17 seq5 102 9e-17 seq275 96.9 4e-15 seq42 96.9 4e-15 seq259 87.8 2e-12 >seq10 Length=3591014 Score = 113 bits (124), Expect = 5e-20 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 1319417 GAAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1319358 Query 60116 CTCACCACTATACTACCGAGGATTG 60140 || |||||||||||||||||||||| Sbjct 1319357 CTGACCACTATACTACCGAGGATTG 1319333 >seq95 Length=874464 Score = 105 bits (116), Expect = 8e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | ||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 215442 AAAAATATACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 215383 Query 60117 TCACCACTATACTACCGAGGATT 60139 | |||||||||||||||| |||| Sbjct 215382 TGACCACTATACTACCGAAGATT 215360 Score = 100 bits (110), Expect = 3e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 228089 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 228148 Query 60131 CCGAGGATTG 60140 |||| ||||| Sbjct 228149 CCGAAGATTG 228158 >seq535 Length=141774 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 23109 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 23168 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 23169 TACTACCGAGGA 23180 >seq118 Length=894290 Score = 104 bits (114), Expect = 3e-17 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 432547 AAAAATACTCTCC--GGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 432490 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | |||||||||||||||| ||||| Sbjct 432489 TGACCACTATACTACCGAAGATTG 432466 Score = 102 bits (112), Expect = 9e-17 Identities = 73/83 (88%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 445085 AAAATACTCTCC--GGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 445142 Query 60118 CACCACTATACTACCGAGGATTG 60140 |||||||||||||||| ||||| Sbjct 445143 GACCACTATACTACCGAAGATTG 445165 >seq187 Length=679046 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 124190 AAAAAGTAACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 124249 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | |||||||||||||||| ||||| Sbjct 124250 TGACCACTATACTACCGAAGATTG 124273 Score = 100 bits (110), Expect = 3e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 124364 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 124423 Query 60131 CCGAGGATTG 60140 |||| ||||| Sbjct 124424 CCGAAGATTG 124433 >seq5 Length=3583357 Score = 102 bits (112), Expect = 9e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 2754566 TGAAAAAGGAACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 2754625 Query 60115 ACTCACCACTATACTACCGAGGATTG 60140 ||| |||||||||||||||| ||||| Sbjct 2754626 ACTGACCACTATACTACCGAAGATTG 2754651 >seq275 Length=398669 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 42996 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 43055 |||||||| ||||| || | ||| || ||| | || || |||||||| ||||| || || Sbjct 170723 TTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAATA 170664 Query 43056 AGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGC 43114 || ||||||||||| | || | | ||||||||| ||| |||| | ||||| || | Sbjct 170663 AGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCC-TGAATTTTGGCTTTGACGTTCTC 170605 Query 43115 CACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAA 43174 | | ||| | ||| || || | ||||| ||||| || || || || || ||||| Sbjct 170604 AATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACAAA 170545 Query 43175 GATTTGCATT 43184 ||| |||||| Sbjct 170544 GATCTGCATT 170535 >seq42 Length=1911596 Score = 96.9 bits (106), Expect = 4e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 1671006 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 1671065 Query 60131 CCGAGGAT 60138 |||| ||| Sbjct 1671066 CCGAAGAT 1671073 >seq259 Length=358427 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 35893 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 35834 Query 60126 TAC 60128 ||| Sbjct 35833 TAC 35831 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 36006 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 36065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571772833829640