Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_002371.2 Length=41724 Score E Sequences producing significant alignments: (Bits) Value seq302 208 2e-49 seq1959 87.8 5e-13 >seq302 Length=239003 Score = 208 bits (230), Expect = 2e-49 Identities = 278/384 (72%), Gaps = 2/384 (1%) Strand=Plus/Plus Query 27490 GCTCCTCAGTATCAGCGTCTTTGGCGTCGTCGATACCAAACAAACCGTTAAGGCAATATT 27549 |||| || || ||||| || || | ||| || ||| |||||| | | ||||| ||||| | Sbjct 149612 GCTCATCTGTGTCAGCATCCTTTGAGTCATCAATATCAAACAGAACATTAAGACAATACT 149671 Query 27550 TGCGAGCGTAAGAGCTTGTAGCGCCCGTTACCTGAGCTGCATCCATTCCCTTCTTGTTTT 27609 | | || || || || || || || || |||||||| | ||||||||||||||| | | Sbjct 149672 TCCTTGCATACGAACTAGTTGCCCCAGTAACCTGAGCCGAGTCCATTCCCTTCTTGCTCT 149731 Query 27610 CTTCTTCTCGCGCTATAGCGCTTGCTGAATGGCTATTTTCACCATCTGTAATGGTCGCTG 27669 | ||||| | || | || || || | ||| | |||||| |||||||| || ||| Sbjct 149732 CCTCTTCCCTTGCCAAGGCACTCGCCGTATGTGTTGATTCACCGTCTGTAATCGTTGCTA 149791 Query 27670 TGGCCTTGACGTAATAACGGTCGCCAATCAGCACGATTTCATCACTGATAGACAGGAACA 27729 ||| |||| || ||||| || |||| || | ||| ||| ||| |||||| | Sbjct 149792 CAGCCCTGACATAGTAACGACTCCCTATCATTACAACTTCGTCAGATATACTCAGGAAGA 149851 Query 27730 GACCTTTCAGTAGTGGCTTAACACCCTCAAGAATGTCCTCACAACTGCGGTATTTGTATT 27789 |||| || || || || ||||| ||||| | ||| || ||||| | || ||||| || | Sbjct 149852 GACCGTTAAGAAGAGGTTTAACCCCCTCCAAAATATCTTCACAGATACGATATTTATACT 149911 Query 27790 TACCAAACGAGTTGTACTGATTCTTTGGCGCATTCAGATGCTC-CTGAATTTCAGCAAGT 27848 |||| || ||||||||| |||||||| || || || || || |||||| || || || Sbjct 149912 TACCGAAAATGTTGTACTGGTTCTTTGGTGCGTTAAG-TGTTCGCTGAATCTCTGCTAGC 149970 Query 27849 CTTGCGTAAAACTCTTTGCTCATG 27872 |||||||||| ||||| |||||| Sbjct 149971 TTTGCGTAAAATTCTTTACTCATG 149994 >seq1959 Length=43063 Score = 87.8 bits (96), Expect = 5e-13 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 39111 TCAATCATCGCTGATATGCAGAAGCGTCAACGAGATGTAGCAGAACTCGATGCCAGATAC 39170 |||| ||| | || ||||||| || || || ||||| || | |||||| || | ||| Sbjct 9625 TCAACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTAC 9684 Query 39171 ACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAAACTCTCCGCGCTGATGTTTCTGCT 39230 ||||||||| | ||||||||||| || | || ||| |||||||| || |||| || | Sbjct 9685 ACAAAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGAT 9744 Query 39231 GGGCGTAAGCG 39241 || || ||||| Sbjct 9745 GGCCGCAAGCG 9755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133385278982116