Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq122 192 2e-44 >seq122 Length=4874392 Score = 192 bits (212), Expect = 2e-44 Identities = 325/468 (69%), Gaps = 2/468 (0%) Strand=Plus/Minus Query 10604 CATGCATCTGTCGATTGATTCGCTTAAAGAAGCTGGCGCCTTCACTGGGGCTCCTATCGA 10663 |||| | ||| | | ||||| || ||| || | ||||| ||||| || |||| | || Sbjct 2934779 CATGAAACTGACACTCGATTCACTAAAAAAATCCGGCGCATTCACAGGTCGTCCTGTGGA 2934720 Query 10664 GAAAGAGATCACCTGGAAACAGGGCGATAAGGAACTGACTGCAACCGTGTACGTCCGGCC 10723 ||| | ||||||||||| ||| | ||| | ||| | || || || |||| | |||| || Sbjct 2934719 AAAACAAATCACCTGGAAGCAGCGTGATGAAGAATTAACAGCCACGGTGTTCATCCGACC 2934660 Query 10724 CTTGTCGTACAGCACAGCTGTTTCTGACCTTCTGGCC-ATGAATGGCAAGGTGGATGGGG 10782 ||| ||| || || |||||| | |||||| ||| |||||||| || || Sbjct 2934659 GTTGGGTTACCACAGCGCCACATCTGACGTACTGGCCCATGTG-GGCAAGGTTGACGGCA 2934601 Query 10783 TAGCGGGTCGGATAGCCGCGTCAATCGTGGATGAAGAGGGTAAGCCGGTATTCACGCCGG 10842 | || || || || || || ||| |||||||| || | ||||| |||||||| Sbjct 2934600 TTGCCGGGCGTATCGCAGCCAGCATCTGTGATGAAGATGGCCACCCGGTCTTCACGCCTC 2934541 Query 10843 CAGATATCACCGGCGAGGCCGATCCCGGTCGCGGCGCGCTGGATGGAAACCTGACCATCG 10902 ||||| || |||||||| || |||| |||||||||||| ||||| ||||| |||| Sbjct 2934540 AGGATATTACTGGCGAGGCTGACCCCGATCGCGGCGCGCTTGATGGCGCACTGACTATCG 2934481 Query 10903 CCCTGCTCACCGTGATCGCCGAGGTGAACAACCTGGGAAAGACGACCAGCTCAGCGAACT 10962 | || || | || ||||||||| | ||||||||||| |||| ||||||| Sbjct 2934480 CGCTCCTGGTTGCCATTCAGGAGGTGAACGATCTGGGAAAGACCACCAACTCAGCGCCGA 2934421 Query 10963 AGATGAGGTGTGGCATGAGCTGGTGATGTGCGGGATTGGCGGCAGAACCATCGCAGAAGC 11022 ||| || | ||| |||||| || | ||| || ||||| ||||||||||| ||||| Sbjct 2934420 AGACGAATTCTGGTGTGAGCTCGTCCTCAACGGAATCGGCGGAAGAACCATCGCCGAAGC 2934361 Query 11023 CAAGTCGCGTCTCACCTACCGGGAGTTCCTGAGCTGGTGCAAGTTCCG 11070 || |||| || |||||||| || | |||| |||| ||| Sbjct 2934360 CAGAGAAAACCTCAGCTTCCGGGAGTACCAGCTCTGGGTTAAGTACCG 2934313 Score = 82.4 bits (90), Expect = 3e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 10453 TTCTTCCGCCGACGCGCACCTGGTTCGTCTTCCGCGGCTATGTGAGCGACTTCCCGTTCG 10512 |||| ||| ||||||||||||| |||||| ||||| || ||||||||||| | Sbjct 2934982 TTCTGCCGGATACGCGCACCTGGTATGTCTTCAAAGGCTACGTTGCTGACTTCCCGTTTG 2934923 Query 10513 ATTTTGCAGCCAACGCTGTGGTGACCTCTACCGCAACCATTCAGCGCTCCGGCGGTTCCG 10572 | || |||||| | || ||| | ||||| |||||||||||||| |||| | || Sbjct 2934922 ACTTCCAGGCCAACACGGTTGTGCAGACGACCGCCACCATTCAGCGCTCAGGCGCTGGCG 2934863 Query 10573 CCTGGATTCC 10582 | |||||||| Sbjct 2934862 CGTGGATTCC 2934853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180428179994328