Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014-
06-04] 6,263 sequences; 415,781,860 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq3962 98.7 6e-16
seq275 95.1 8e-15
seq19 95.1 8e-15
seq43 93.3 3e-14
>seq3962
Length=6517
Score = 98.7 bits (108), Expect = 6e-16
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256
||||||||| ||||||||||| ||| || || ||| |||| || | |||||||| ||||
Sbjct 378 TTCTTTCTGGATGTTGTAGTCAGACAAGGTG-CGGCCGTCCTCGAGTTGCTTGCCGGCGA 320
Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316
| || || |||||||| || ||| | || ||| ||||| ||||| ||| | |
Sbjct 319 AGATCAGTCGCTGCTGATCTGGGGGGATGCCCTCTTTGTCCTGGATCTTAGCCTTGACGT 260
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| || ||||| | | || || |||| |||||||| ||||| || || || || |
Sbjct 259 TCTCGATGGAATCCGAGGGCTCAACCTCCAGAGTGATGGTCTTGCCTGTAAGGGTCTTGA 200
Query 34377 CAAAGATCTGCAT 34389
| || ||||||||
Sbjct 199 CGAAAATCTGCAT 187
Score = 98.7 bits (108), Expect = 6e-16
Identities = 138/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Minus
Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259
||||||| ||||| ||||| || || ||| | || || | ||||||||| || || |
Sbjct 6288 CTTTCTGAATGTTATAGTCAGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGA 6229
Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATC 34317
| || ||||||||||| ||| | || ||||||||| || ||||| ||| | ||
Sbjct 6228 TCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC--CTGGATTTTGGCCTTCACATT 6171
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || || || | | || || || | |||||||| |||||||| ||||| || ||
Sbjct 6170 CTCAATTGAGTCAGAGGGCTCAACCTCTAGTGTGATGGTCTTGCCGGTAAGAGTCTTGAC 6111
Query 34378 AAAGATCTGCAT 34389
||| ||||||||
Sbjct 6110 AAAAATCTGCAT 6099
>seq275
Length=398669
Score = 95.1 bits (104), Expect = 8e-15
Identities = 137/191 (72%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259
|||| || ||||||||||| ||||| || | || || | |||||| || || ||||
Sbjct 170725 CTTTTTGAATGTTGTAGTCTGACAGTGTGCGCCCATCCTCAAGCTGCTTTCCAGCAAAAA 170666
Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCG 34318
| || ||||||||||| ||| | | |||||||| || ||| ||||| | |
Sbjct 170665 TAAGACGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGAAT-TTTGGCTTTGACGTTC 170607
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || || || | | ||| || || | ||||| ||||| || ||||| |||||||||
Sbjct 170606 TCAATAGAGTCTGAGGGTTCAACCTCTAAGGTGATAGTTTTCCCAGTGAGGGTTTTCACA 170547
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 170546 AAGATCTGCAT 170536
>seq19
Length=2947477
Score = 95.1 bits (104), Expect = 8e-15
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259
||||||| || |||||||| |||| | | | || || | ||||||||| ||||| |
Sbjct 340559 CTTTCTGAATATTGTAGTCAGACAATGTCCTGCCATCTTCAAGCTGCTTGCCAGCGAAGA 340618
Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319
|||| ||||||||||| ||| | | |||||||| ||||| ||| | ||
Sbjct 340619 TGAGACGCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCT 340678
Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379
| || ||||| | | ||||| || | |||||||| ||||| || || || || || |
Sbjct 340679 CAATGGAATCTGAGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTGACGA 340738
Query 34380 AGATCTGCAT 34389
||||||||||
Sbjct 340739 AGATCTGCAT 340748
>seq43
Length=2082672
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||||| | || || || |||||||| || ||||| || |||||||| |||
Sbjct 901300 CCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCAGAC 901241
Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
| | || || | || || | ||||||||| || || || | |||||||| || |||
Sbjct 901240 AAGGTG-CGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGGGG 901182
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || || ||||| || || ||||| | | || ||||| | | ||| ||
Sbjct 901181 GATGCCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCAAC 901122
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || ||||| ||||| ||||| || || ||||||||||||||
Sbjct 901121 TTCCAGAGTAATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 901074
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || ||||| | || || || || | || ||| ||||| || |||||||| ||
Sbjct 901073 TCCACCACGCAGACGGAGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAGTCAGA 901014
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| |||| | || || | |||||| || || || || | | ||||||||| |||
Sbjct 901013 CAAAGTACGGCCATCTTCAAGCTGCTTACCGGCAAAGATCAATCTCTGCTGGTCTGGGGG 900954
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||| || || ||||| ||| | | | || ||||| | | || ||
Sbjct 900953 GATGCCCTCTTTATCCTGGATCTTAGCCTTGACGTTCTCGATGGAATCCGAGGGCTCAAC 900894
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| || || || ||||| |||||||||||
Sbjct 900893 CTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 900846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323047339813280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |