Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq93 113 4e-20 >seq93 Length=974399 Score = 113 bits (124), Expect = 4e-20 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || || || || |||| ||||| ||||||||||| |||| ||| |||||||| |||||| Sbjct 914956 ATGTATGTGTCGATTAACAAACTGTACATTTCTGAGTGAACATTTTCCATTGCAATCTGA 915015 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAA 16623 || ||||| ||||| | ||||| | || || ||||| || | || ||||| |||| Sbjct 915016 AAGCCATAGAAGCACCGTGCTTCTGTTACCTGAACTTCTTGACT-GAATCTTTCCACTAA 915074 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 |||||| || || || ||||| ||| ||||| || ||||| | || ||||||| Sbjct 915075 GTTTTCATTGACAATCCCATCAGAAGCAGCAAAGAAGGCAAGGACATGGGAGATAAAATG 915134 Query 16684 tttttC 16689 ||| || Sbjct 915135 TTTCTC 915140 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 15887 TAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTT 15946 ||||| ||| ||||| || ||||||||| || ||||| | ||| ||| | || Sbjct 914091 TAAAAGTCAGCATCTAAAGTAAACACATTCTCCGCCTTATTAGCCATCACTCCCCACTTC 914150 Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 |||||||||| |||| |||||||||||||||| || || ||||||||||| || | ||| Sbjct 914151 TGATATTCACCAACTTTCTTTTCAAAGAAATTAGTCTTGCCTTCTAATGAGATGTGCTCC 914210 Query 16007 ATAAAATCAAAAGGATTTT 16025 || || ||||| || |||| Sbjct 914211 ATGAAGTCAAATGGGTTTT 914229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || |||||||||||||| || |||| || |||| ||| || || || ||||| ||| Sbjct 914656 AAGGTAAGACCTGGCATAAGCCCTCTCTTCTTAAGCCAGAAAATGGCAGCAAAGCTTCCA 914715 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || ||||| ||||| || || || ||||| |||| | ||||||| | |||| | Sbjct 914716 GAGAAGAAGATACCCTCCACAGCAGCAAAGGCAATTACTCGCTCAGCAAACGTGGCAGAC 914775 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACA-GTTCATGTTCTC 16464 | | | ||||| || | ||||||| || || | || ||||| | |||| || Sbjct 914776 TCATGAGCAATCCACTTCATGGCCCAATCGGCCTTCTTCTTCACACATGGGAGTGTT-TC 914834 Query 16465 TATTGCATTAAATAAATA 16482 || |||||||||||||| Sbjct 914835 AATGGCATTAAATAAATA 914852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462475791091800