Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq122 86.0 6e-13 >seq122 Length=4874392 Score = 86.0 bits (94), Expect = 6e-13 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTAT---CACTTCAGAAGAAGGCAA 14590 |||||||||||||||||| || ||||| || ||||| || | | | || | |||| Sbjct 635859 AGTAAAATGGTTTAACGCTGAGAAAGGTTTCGGCTTCATTTCCCCAACTGACGGCAGCAA 635918 Query 14591 AGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGG 14650 |||| |||||| |||||||| |||||||| | || |||||| | || || ||||| Sbjct 635919 AGATGTGTTCGTACACTTCTCTGCAATCCAGGATTCAGGTTTCAAAACCCTGGAAGAAGG 635978 Query 14651 TCAAAAAGTTGAATTT 14666 || |||||| | ||| Sbjct 635979 CCAGAAAGTTAACTTT 635994 Score = 80.6 bits (88), Expect = 3e-11 Identities = 99/135 (73%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAG---GCAA 14590 |||||||||||||||| | || ||||| || ||||| || || ||| ||| | |||| Sbjct 4281732 AGTAAAATGGTTTAACTCTGAAAAAGGCTTCGGCTTCATTACGCCAGCAGATGGCAGCAA 4281673 Query 14591 AGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGG 14650 |||| | |||| || |||||||| ||||| | | | | |||| | || || ||||| Sbjct 4281672 AGATGTATTCGTACATTTCTCAGCCATCCAGAGTAACGATTACAAAACGCTGGACGAAGG 4281613 Query 14651 TCAAAAAGTTGAATT 14665 || || ||||| || Sbjct 4281612 GCAGAAGGTTGAGTT 4281598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48450891129198