Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq4 179 3e-40 >seq4 Length=4567600 Score = 179 bits (198), Expect = 3e-40 Identities = 250/348 (72%), Gaps = 2/348 (1%) Strand=Plus/Plus Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 || |||||||||||||| ||||||||||| ||| | |||||||| ||||||||||| || Sbjct 988814 GGTGATTTGGGTCCTGTATATGGATTTCAGTGGCGCCATTTTGGTGCTGAATATGTAGAT 988873 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| || | || |||| | || || | |||| || | | ||| Sbjct 988874 ATGTTTACTGACTACAGCAACAAAGGTATTGACCAGCTGAGTGATGTGATCAGTAAAATA 988933 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 |||| | || | |||||||||||| | | || || ||||| || || || || Sbjct 988934 AAAAATAGACCTGATGACAGAAGAATTCTCATGTGTGCATGGAATCCTGTTGACGTCCCA 988993 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATG-CCAATTTTACGTTGCTAATAATGAATT 20456 ||||||||| || || || ||| ||| || |||||||| || || ||| |||| | Sbjct 988994 AAAATGGCTTTACCGCCTTGCCAT-TGCCTTGTGCAATTTTATGTGGCAAATGGTGAACT 989052 Query 20457 GTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 ||| |||||| | |||||| | || || ||||||||||||||||| || || || ||||| Sbjct 989053 GTCTTGTCAACTCTATCAAAGGTCAGCAGATATGGGACTGGGTGTCCCATTTAACATTGC 989112 Query 20517 AAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAA 20564 || ||||| || ||||| |||||||| || ||||| ||| |||| || Sbjct 989113 CAGCTATGCTCTCCTTACTTATATGATAGCTCATGTAACAAATTTGAA 989160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399153530160535