Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_002730.1 Length=38297 Score E Sequences producing significant alignments: (Bits) Value seq2664 284 3e-72 seq1959 96.9 8e-16 seq122 93.3 1e-14 >seq2664 Length=6989 Score = 284 bits (314), Expect = 3e-72 Identities = 311/412 (75%), Gaps = 6/412 (1%) Strand=Plus/Plus Query 18193 CTGATATGTGGAAAGCCAGTGGTAAAAGTGAATCTGAATCTCCGTACCACTACCTGCGAA 18252 |||||||||||||||||||||| ||||| ||| ||||| || ||||| || || || | Sbjct 1 CTGATATGTGGAAAGCCAGTGGGAAAAGCGAAAGCGAATCCCCTTACCATTATCTCCGTA 60 Query 18253 ACAAGCAGACCAAAGAGTTCTTAGCCGAGCTGGAGAAAAACCACGAATCTGTGGTTTTTA 18312 |||| ||||| ||||| ||| | | ||||| |||||||||||||||||||||||||| | Sbjct 61 ACAAACAGACAAAAGAATTCCTGACAGAGCTTGAGAAAAACCACGAATCTGTGGTTTTCA 120 Query 18313 CTGAGCGCGGTGTACACGGTGGAACATATGGCGGGAAGTTTGTTGCTTACGATTATGCGG 18372 ||||||| || || | || || || ||||| || |||||||| || || || ||||||| Sbjct 121 CTGAGCGGGGAGTCAAAGGGGGTACTTATGGTGGTAAGTTTGTGGCATATGACTATGCGG 180 Query 18373 CTTGGTTAAACCCCGGGTTCAAGTACGCGGCCTATAAAGTCCTCGATGACTACTTCACTG 18432 | ||| ||||||| || || || || || || || ||||| || ||||| || ||||| | Sbjct 181 CATGGCTAAACCCTGGATTTAAATATGCAGCGTACAAAGTTCTTGATGATTATTTCACAG 240 Query 18433 GAGAACTTCAGCATCGCAACAGCT---TAAGTGCGCAGCTCAACATGAAATGTCATGAGT 18489 | ||||| || |||| |||| | || || ||| | || || |||||| |||| Sbjct 241 GTCAACTT---CAACGCAGAAGCTCTCTCAGCGCTCAGTTGAATATTAAATGTATGGAGT 297 Query 18490 TTGACCAGAAGAAAGACATGGCGAGCTTCTGCGGACAAGGGCTGGCAGCATGGCGCTATA 18549 |||||||||||||||| |||||||| || ||||| || ||| |||| | ||| || Sbjct 298 TTGACCAGAAGAAAGATATGGCGAGTTTTTGCGGGCAGGGGTTGGCTGGCTGGAAACATG 357 Query 18550 CGAAGCCAGTGTTGGTCGCTGAGATTAACTCCCTGGCTAACCAGCTGCAGAT 18601 || | || |||| |||||||| || || ||| | | ||| | ||||| Sbjct 358 AAAAAGCTGTTCTGGTTGCTGAGATAAATTCTCTGACAAGTCAGTTACAGAT 409 >seq1959 Length=43063 Score = 96.9 bits (106), Expect = 8e-16 Identities = 112/148 (76%), Gaps = 5/148 (3%) Strand=Plus/Plus Query 17444 AGAACTGAAGCTGGCGAACGCCACCATTACTGACATGCA-ACAGCGCCAGCTTGATGCTG 17502 ||| || |||||||| || | || || || |||||||| ||| ||||||| |||| || Sbjct 9606 AGATCTTAAGCTGGCTAAGTCAACAATCACCGACATGCAGACA-CGCCAGCGCGATGTTG 9664 Query 17503 ATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTC 17562 ||||||||| || || ||||| ||||||||||||||||| ||||| || ||| ||| Sbjct 9665 CTGCACTCGACGCAAAGTACACAAAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTC 9724 Query 17563 TTCGGCGCAAGCTTGATAATGGTGGCCG 17590 | ||||| || | ||| |||||| Sbjct 9725 T---CCGCAATGCTGTTGATGATGGCCG 9749 >seq122 Length=4874392 Score = 93.3 bits (102), Expect = 1e-14 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 8966 ATAATGCCCTACCGCTCCTTGGGTGATACCCAGTTCATCAGCGATTGAGTATTGGGTTAT 9025 ||| ||||| || || | |||||| || || |||||||| || | || || || Sbjct 2985187 ATAGTGCCCAACAGCACTTTGGGTAATGTTCATCTCATCAGCAATGTGCTGCTGAGTAAT 2985128 Query 9026 TCCCAATTCTTTCTTTTTTGACTCATACAAAGCCTTAAGCCGCTTAGCGTCTTCGAGCTG 9085 || | | ||| || || |||||||||| ||| ||||| || || |||||||| ||||| Sbjct 2985127 ACCAAGATTTTTTTTCTTGGACTCATACAGAGCTTTAAGGCGTTTGGCGTCTTCAAGCTG 2985068 Query 9086 TTCTGTCGTCAGTGATTTTTTATTTTCCATAGCTTAATTCTAATAGCT 9133 |||||||||||| ||| | ||| ||||| || ||| ||||| || Sbjct 2985067 TTCTGTCGTCAGGAGCTTTGTCGTTTTCATAG-TTTATTTTAATACCT 2985021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122419694587554