Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq45 114 1e-20 seq275 91.5 1e-13 seq3962 86.0 6e-12 seq93 86.0 6e-12 >seq45 Length=1811775 Score = 114 bits (126), Expect = 1e-20 Identities = 178/253 (70%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 23241 CTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGG 23300 |||| | ||||||| |||||| |||||||| | || ||||||| || || || | Sbjct 850163 CTTCAACTTACTTTTCATACAACTTTTCAAATTCCTCTCCCCAACAGTCAGCAAGACCAG 850222 Query 23301 GCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGCGTCTCATAA 23357 | || ||||||||||| ||||| | |||||| ||||| | |||| | Sbjct 850223 GACTCTGATGAGGACACATGAGGCTCCA---TTTCTCATTTTTCTCAACTCTCTTCATGA 850279 Query 23358 AAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGG 23417 | | || || ||||||| || || || || || | || || |||||||| ||||| | Sbjct 850280 ACAAGTCAGGAATCCATAAGGCATAAAAAAGGTCTCTTGCACGAACCTCCTCCTTGCCAG 850339 Query 23418 TGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGG 23477 |||||||||||| || | || || ||||| || |||||||| || || ||||| | | Sbjct 850340 TGTTCTTTTTCAGGTCTAGGAAATCAAACACATCTGCATGCCATGGTTCAAGGTAGATAG 850399 Query 23478 CAAACGCGCCCGG 23490 ||||||| || || Sbjct 850400 CAAACGCACCAGG 850412 >seq275 Length=398669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || || ||||| |||||| | || |||||||| || Sbjct 170536 ATGCAGATCTTTGTGAAAACCCTCACTGGGAAAACTATCACCTTAGAGGTTGAACCCTCA 170595 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | | || | |||||| | ||| |||||||||||| | || || |||||| Sbjct 170596 GACTCTATTGAGAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCCCCAGACCAG 170655 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | || || || || || || ||| Sbjct 170656 CAGCGTCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGGCGCACACTGTCAGACTACAAC 170715 Query 31373 ATTCAAAAAG 31382 |||||||||| Sbjct 170716 ATTCAAAAAG 170725 >seq3962 Length=6517 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || ||||| || ||||| | || ||||| || || Sbjct 6099 ATGCAGATTTTTGTCAAGACTCTTACCGGCAAGACCATCACACTAGAGGTTGAGCCCTCT 6158 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | || | || || | ||| ||||||||| ||| | || || |||||| Sbjct 6159 GACTCAATTGAGAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 6218 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || |||||||| ||| | || || Sbjct 6219 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGA 6253 >seq93 Length=974399 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 ||||| | ||||||| || || | || || || || || || ||||| ||||| || Sbjct 915141 TGAGAAACATTTTATCTCCCATGTCCTTGCCTTCTTTGCTGCTTCTGATGGGATTGTCAA 915082 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 || || || || |||||||| |||||||| || || || || || | ||||| || Sbjct 915081 TGAAAACTTAGTGGAAAGATTCAGTCAAGAAGTTCAGGTAACAGAAGCACGGTGCTTCTA 915022 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829 || ||||| | || || ||||| || || ||||||||||| Sbjct 915021 TGGCTTTCAGATTGCAATGGAAAATGTTCACTCAGAAATGTA 914980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445731502062960