Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq122 515 9e-142 >seq122 Length=4874392 Score = 515 bits (570), Expect = 9e-142 Identities = 812/1154 (70%), Gaps = 22/1154 (2%) Strand=Plus/Plus Query 16979 TATCATCACGGTGTCCGGGTCCAAGAGATCAATGACGGGACCCGCCCCATTCGCACCATC 17038 ||||| ||||| || || ||| || ||||||||||| |||||| ||| ||| | Sbjct 199787 TATCACCACGGCGTACGCGTCGTTGAAATCAATGACGGAACCCGCAGTATTTCCACGGTA 199846 Query 17039 GCCACCGCGATCATCGGCCTGGTAGCCACCGCCGAAGACGCCGACGCCACCGCCTTTCCA 17098 |||| | || ||||| |||| ||| || | || || || ||||||| || || Sbjct 199847 TCCACTTCTATTGTCGGCATGGTCTGCACTGCAGCGGATGCTGATGCCACCGTATTCCCG 199906 Query 17099 CTCGATACGCCGGTACTCATCACCAACGTGCAGGCTGCCATCGGCAAGGCGGGCACCAGC 17158 ||| | |||||||| || || ||| |||||||||| || | || || || || |||| Sbjct 199907 CTCAACACGCCGGTGCTGATTACCGACGTGCAGGCGGCGGTGGGGAAAGCCGGTGTCAGC 199966 Query 17159 GGTACGCTGCCCGCAAGC-CTGCAAGCAATCGCCGACCAGGCCAACGCCGCCACTGTGGT 17217 || |||||| || |||| ||||| || || ||||||||| ||| | | || ||||| Sbjct 199967 GGCACGCTG-GCGAAAGCGCTGCAGGCGATTGCCGACCAGAGCAAGCCGGTAACGGTGGT 200025 Query 17218 GGTGCGGGTGAAGCCGGGCGAGGATGAAGCCGCGACCAATAGCGCGGTCATCGGCGGCGT 17277 |||||| || || ||| || || ||||| || |||| ||| ||||||||||| Sbjct 200026 GGTGCGCGTTGAGGAGGGTGAAGACGAAGCGGCAACCACCAGCAATATCATCGGCGGCAG 200085 Query 17278 CAGCGCCGATGGCAAGTACACCGGCATGAAGGCCTTGCTTGCCGCCAAGGCCCGCTTGGG 17337 | || | ||| |||||||| ||||| || |||| || || || || | | || Sbjct 200086 CGATGCTAACGGCCGCTACACCGGGATGAAAGCGCTGCTCGCGGCGCAGACCGACCTTGG 200145 Query 17338 CGTGGTACCGCGCATCCTCGGCGTGCCGGGCCTGGATACCCAGCCGGTCGCTACCGCACT 17397 ||| ||||| || |||||||||||||| |||||| | | | || || ||||| || Sbjct 200146 CGTTAAGCCGCGTATTCTCGGCGTGCCGGGGCTGGATTCGCTGGAAGTGGCCACCGCGCT 200205 Query 17398 CATCGCCATCGCCCAGCAACTGCGCGCCTTCGCTTATGTCTCCGCCAGCGGCTGCAAGAC 17457 || ||| |||||| ||||||||||||| ||| |||| || |||||| || || Sbjct 200206 GGCGGCAATCTGCCAGCAGCTGCGCGCCTTCGGCTATATCTCGGCTTACGGCTGTAAAAC 200265 Query 17458 --AAAGGAAGAGGCCACCGCCTACCGCGAGAACTTCGCCGCGCGCGAAGCCATGGTGATC 17515 ||| || || | || ||||| |||||| | |||||| ||||||||| Sbjct 200266 GGTAAG--CGATGCGCTCAAGTATCGCGAAAACTTCAGCCAGCGCGAGCTGATGGTGATC 200323 Query 17516 TGGCCGGACTTCCTGACGTGGAGCACCGTGGTCAAC----CAGACCGTGCCTGCGCCAGC 17571 ||||| ||||| | | |||| ||||||| || | | || ||||| |||| | Sbjct 200324 TGGCCCGACTTTGTCGCCTGGAACACCGTGACCAGCGCGGCGGAAACTGCCTATGCCACC 200383 Query 17572 TGTTGCCCAGGCACTGGGCTTGCGTGCCCGGATCGATCAGGAGGTCGGTTGGCACAAGAC 17631 |||| || || ||| |||| ||| |||||| | || ||| ||||| || || Sbjct 200384 ----GCCCGCGCCCTCGGCCTGCGCGCCAAAATCGATAACGACAGCGGCTGGCATAAAAC 200439 Query 17632 CCTGTCGAACGTCGCCGTCAACGGCGTGACCGGCATCAGCGCCGACGTGTTCTGGGACCT 17691 |||||||||||||| ||||||||||||||||||| | |||| || ||||||||||| Sbjct 200440 CCTGTCGAACGTCGGCGTCAACGGCGTGACCGGCGTTTCCGCCTCGGTATTCTGGGACCT 200499 Query 17692 GCAGAGCCCCAGCACCGACGCCAACTACCTCAACGAGAACGAG-GTCACCACCCTGGTGC 17750 |||| | ||||| ||| | || || || | | || |||||||| ||| | | Sbjct 200500 GCAGCAGGTGGGGACCGATGCCGATCTGCTGAATGA-AGCCAGCGTCACCACGCTGATCC 200558 Query 17751 AGGAAGGGGGATTCCGTTTCTGGGGTTCGCGCACCTGCAGCGATGATCCGCTGTTCGCCT 17810 ||| || ||||| |||||||| |||||||| |||||||| ||||||||||||| Sbjct 200559 GCAAAGACGGTTTCCGCTTCTGGGGCAACCGCACCTGTAGCGATGACCCGCTGTTCGCCT 200618 Query 17811 TCGAGAACTACACCCGCACCGCCCAGGTGCTGGCCGACACTATCGCCGAAGCGCACATGT 17870 | || |||||||||||| | || |||||| | |||||||| || ||||| ||||| |||| Sbjct 200619 TTGAAAACTACACCCGCTCGGCGCAGGTGATCGCCGACACCATGGCCGATGCGCATATGT 200678 Query 17871 GGGCGGTTGACAAGCCCATGCACCCGTCACTGGTGCGCGACATCCTTGAGGGCGTGAACG 17930 |||| |||||||| || ||| | |||||||||||||| | | || | |||| Sbjct 200679 GGGCCAACGACAAGCCGCTGACGCCGACGCTGGTGCGCGACATTATCGCCGGGATCAACG 200738 Query 17931 CGAAGTTCCGCGAGC---TCAAGGGGCTCGGTCTGATCATCGACGCCCAGGCCTGGTACG 17987 | |||||||| |||| |||| | |||| | | | |||| | |||||||| Sbjct 200739 CCAAGTTCCGTGAGCTGATCAACG---CCGGTTATCTGCTGGGCGCCAACTGCTGGTACG 200795 Query 17988 ACCCCAACGTGAACGACAAGGACACGCTCAAGGCCGGCAAGCTGCGCATCACCTACGACT 18047 || | || ||| | |||| | || || |||||||||||| ||| |||||||| Sbjct 200796 ACGAAAGCGCCAACAGCCAGGAGAGCCTGAAAGCCGGCAAGCTGTATATCGACTACGACT 200855 Query 18048 ACACCCCGGTGCCGCCGCTCGAGGACCTGACCTTCTTCCAGAAGATCACCGACAGCTATC 18107 | ||||||||||||||||| || || |||||| | ||| || ||||||||||| | Sbjct 200856 ATACCCCGGTGCCGCCGCTGGAAGATCTGACCCTGCGTCAGCGCATTACCGACAGCTACC 200915 Query 18108 TCGTCGACTTCGCC 18121 | | |||||||| Sbjct 200916 TGGCGAACTTCGCC 200929 Score = 165 bits (182), Expect = 2e-36 Identities = 659/1003 (66%), Gaps = 52/1003 (5%) Strand=Plus/Plus Query 12801 GATCAGCAGGCGGAAATCGCCGCCCGCCTCGCCCTGGAGTCCGAACCGCTGACCAAGCTG 12860 ||| |||||| || || ||| | | | |||||| ||| || ||| | ||||||| Sbjct 197000 GATAAGCAGGAGGCGATAGCCCGCACCTTAACCCTGGCGTCGGAGCCGATCGTCAAGCTG 197059 Query 12861 CTCGAGGAAAACGCATACCGCGAAATGCTCTGGCGCCAGCGGGTCAACGAGGCGGCTCTC 12920 || ||||| ||||| |||||||| || || ||||||||| | ||||| ||||| Sbjct 197060 CTGGAGGAGAACGCCTACCGCGAGGTGATCCTGCGCCAGCGCATTAACGAAGCGGCGAAA 197119 Query 12921 GCCAACATGCTGGCCAGCGCCCAGGGCGCTGACCTCGACCAGCTCGCCGCGAACTACAAC 12980 |||| |||| |||| |||| ||| || ||||||||||| | | ||| || | Sbjct 197120 GCCACCATGGTGGCATTCGCCAGCGGCAGCGATCTCGACCAGCTTGGGGTCAACAACGGC 197179 Query 12981 GTCAAGCGCCTGGTCATCCAGCCTGGAGATCCGTCGAAGGTGCCGCCCGTGCCGGAACTG 13040 |||| || ||||| | | || | |||| | | ||||||| |||| | | Sbjct 197180 GTCACCCGTCTGGTGCTGAAACCCGCAGATAACAGCACGCTGCCGCCGACCCCGGCGCGG 197239 Query 13041 CTGGAGTCCGACGACAGCCTGCGCGAGCG-GGCGCAGATGGCCTGGGAAGGCCTCAGCAC 13099 || ||| ||||||| | | || ||| ||| | ||||| || || || ||| Sbjct 197240 CTTGAGAGCGACGACGACTTCCGTCTGCGCATCGCCCA-GGCCTTTGAGGGGCTGAGCGT 197298 Query 13100 CGCGGGACCGCGTAACAGCTACATCTTCCACGCCCGCGCCGCCGACGGTCGCGTCGGCGA 13159 ||||| ||| | ||| | ||||||||| |||||| |||||||| | || Sbjct 197299 GGCGGGGCCGGGCGGGGCCTATGAATATCACGCCCGCAGCGCCGATGGTCGCGTGGCGGA 197358 Query 13160 TGCCTCGGCCGTCAGCCCATCGCCTGCCGTTGTCGTGGTGACGGTGCAGGC-CGCCCAGG 13218 || | | ||| ||||||| || || ||||| ||| | || |||| | | || ||| Sbjct 197359 TGTCACCGCCATCAGCCCGTCCCCGGCCGTGGTCACCATCACCGTGCTGTCGCGTGAAGG 197418 Query 13219 GCAACGGCAGCGCCCCGGCGGACCTGCTGGCCATCGTCGACGCCTACCTCAACGACGCCG 13278 || |||| ||| || || ||||||||| ||||| |||| || || |||| | Sbjct 197419 GC-GCGGCGAGGCCAGCGCTGAACTGCTGGCCGTCGTCAACGCGGCGCTGAATGACGAGG 197477 Query 13279 ACCGTCGCCCCGTCGCTGATCGCCTAACAGTCCAGTCCGCCCAAGTGCTCGAGTACCGTG 13338 | ||||| || || |||||| | | || ||||| || || | |||||||||| | Sbjct 197478 AGGTGCGCCCGGTGGCGGATCGCGTCAGCGTGCAGTCGGCAAAAATCGTCGAGTACCGCG 197537 Query 13339 TCGACGCGACGCTCTACCTGGCCACCATCGGCCCGGAGTCCGAGCCGATACTCGATGCCG 13398 | || || ||||| | || | | | ||| |||||| | |||||||| | | |||| Sbjct 197538 TTGAGGCCACGCTGTTTCT--CTATC-CCGGGCCGGAGGCGGAGCCGATCCGC---GCCG 197591 Query 13399 CC-CGG--GCCCGCTTGACGGCCTACGTCCA-TCAGCGTCGACGCCTGGGCATGGAAGTG 13454 || ||| ||||| || |||||| || | | |||| || ||||| || | Sbjct 197592 CCTCGGCAGCCCGGCTGGCGGCCTTTGTAAACGCCCAGTCG-CGGCTGGGGCGCGA--TA 197648 Query 13455 TCCGAA--TCGGCGGTGCATGCGGCCCTCCACGTGGAAGGCGT---GCGC-AAGGTCACG 13508 |||| | || ||| || ||||||| || ||||| || || || |||| || | | Sbjct 197649 TCCGCAGGTCAGCGCTGTATGCGGCGCTGCACGTCGAGGGTGTCCAGCGCGTAGAGCTGG 197708 Query 13509 CTCAGCAACTGGT-CGGACATCGCCGCCACA-CCAGCCCAGGCGCCCTACTGCACCGGAA 13566 | |||| ||| | | || | | || | | |||||||| | |||||||||| Sbjct 197709 CGCAGC--CTGCTGCTGATGT-GGTGCTGGATAAAACCCAGGCGGCGTACTGCACCG--- 197762 Query 13567 TTACGCTGA---CGCTGGG------GGATGAGTGATGCCCAGCTTGCTCCCACGCAACGC 13617 ||||| || || | || ||||||||| || || ||| || || || Sbjct 197763 CTACGCAGATCGCGGTAGGAGGTTCCGATGAGTGACCGCCTGC-TGC-CCGTCGGCTCGT 197820 Query 13618 CACCGAACTTGAG--CGCCTGGCCGCCGAAGCCCTGGCGCAGATTGAGCGGGTACCGATC 13675 ||| | || ||| ||| |||||||||||| |||| | ||| | | ||| | Sbjct 197821 CAC--AGCTCGAGGTGGCC--GCCGCCGAAGCCTGTGCGCGCCTGCAGCAGCTGCCGGTG 197876 Query 13676 CCATTGCGCCAACTGTGGAACCC-CAGCACCTGCCCGGTCGCCCTTCTGCCGTACCTGGC 13734 || ||||| ||||||||||| ||| || |||||| | | || || || || || || Sbjct 197877 CCGCTGCGCACCCTGTGGAACCCGCAG-ACTTGCCCGCTGCCGCTGCTCCCCTATCTCGC 197935 Query 13735 CTGGGCGTTCTCCGTCGATCGCTGGGA-CAGCACCTGGCCGGA 13776 |||||| | || || ||||||||||| ||| | |||||||| Sbjct 197936 CTGGGCCTGGTCGGTGGATCGCTGGGATCAGGA-GTGGCCGGA 197977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113725941217252