Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq93 120 4e-22 seq45 116 5e-21 >seq93 Length=974399 Score = 120 bits (132), Expect = 4e-22 Identities = 145/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || || | ||| |||||||| || |||| ||| || ||| Sbjct 914656 AAGGTAAGACCTGGCATAAGCCCTCTCTTCTTAAGCCAGAAAATGGCAGCAAAGCTTCCA 914715 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 || |||||||| || || || |||||||||||||| | || ||| || | ||| Sbjct 914716 GAGAAGAAGATACCCTCCACAGCAGCAAAGGCAATTACTCGCTCAGCAAACGTGGCAGAC 914775 Query 33753 TCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 ||||| |||||||| ||||||||||||||||| || ||||| || | ||||| Sbjct 914776 TCATGAGCAATCCACTTCATGGCCCAATCGGCCTTCTTCTTCACACATGGGAGTGTTTCA 914835 Query 33810 ATGGCATTAAAGAGATA 33826 ||||||||||| | ||| Sbjct 914836 ATGGCATTAAATAAATA 914852 >seq45 Length=1811775 Score = 116 bits (128), Expect = 5e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 |||||||| || || |||| |||| |||| ||||| || || || | | ||| |||||| Sbjct 850495 TTGTTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATA 850554 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA 63536 ||||| |||||| ||||||| || || | ||||| | ||| ||||||||||| | | Sbjct 850555 ATACCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATA-CAGTG 850613 Query 63537 ATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 | || | | ||| || || || || ||||| || || || || ||| | ||||| Sbjct 850614 AATGTTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTC 850673 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63646 || |||||||| || |||||||| |||| || || || || ||||| Sbjct 850674 GTAAATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCAACTAGA 850724 Score = 105 bits (116), Expect = 8e-18 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 62124 AAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 62183 |||||||| || || || |||| | || || |||||||||||||| | |||||| Sbjct 848718 AAATGCATGGATGTGAGCTTCCCATAATTTGGCTCAGCTATATGGATATTTAGTGATTGA 848777 Query 62184 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATT 62243 |||||| |||||||| || || || |||||||||||||| | || || |||| |||| Sbjct 848778 GATTGATCAATGAAGGCCCCTCTATCAGCAGCCATTTTTATAACAGTTTTCTGTGAAATT 848837 Query 62244 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTT 62277 ||||||| ||||| || | ||| ||| || |||| Sbjct 848838 TCCCAAACTGTTTTGTATAGCTC-CTTGATTTCTT 848871 Score = 105 bits (116), Expect = 8e-18 Identities = 206/300 (69%), Gaps = 11/300 (4%) Strand=Plus/Plus Query 62826 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG---ACAATTACT 62882 ||||||| |||||||| || | ||| || |||||||| || ||| || ||| | || Sbjct 849755 TCTGGAACTGGATAATAGTTCACATCAATTATTTTATTCAGGTTTTTGGTCACAGT--CT 849812 Query 62883 TTGACCACATCCTTCAGTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTT 62938 ||| | || || ||||| || | ||| || | | | | || | ||||||||||| Sbjct 849813 TTGTC-ACCTCTTTCAGCTTTACAAAGTCGTAGGTTTTGTCAGGCT-TCACAAACATGTT 849870 Query 62939 CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62998 | ||||| ||||||| |||||| || || | || | | | ||| | | || Sbjct 849871 AACGGCAACTGATGCCAAATTACAAACAGCAATTTCTGTCGGCGAGGAATACTCAACAAT 849930 Query 62999 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63058 ||||||||||||||| || | || || ||||||| ||| || ||||| || ||| Sbjct 849931 CTCAGTGCAAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCGGTT 849990 Query 63059 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63118 || ||||| || || | ||| | || || |||||||| | ||||| || ||||| || Sbjct 849991 GCAAGCATCTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGAGACTCAATAATGGC 850050 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || ||||| ||||| || ||||| |||| ||||||||||| || || | || | Sbjct 849141 ACCTGGAACTCTCCTGATAATACCCTCCTTGTGTAAATATTTGATGTGTAGGCCTCAATA 849200 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||||||| || || ||||| ||||| ||||||||||| | ||||||| Sbjct 849201 GACTCATTATTACCCAAAATCTGCGCTGTTGAGGCAGTTGGCATAGGTGCAAGCAATAAA 849260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629768293154640