Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq122 111 3e-20 seq83 107 4e-19 >seq122 Length=4874392 Score = 111 bits (122), Expect = 3e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 352 TATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCT 411 || || |||||||||||| ||||||||||||| ||||||| ||||||||||| ||||| Sbjct 980079 TAATAGTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCT 980020 Query 412 CTACCGACTGAGCTAACGACCCAATT 437 ||||| ||||||||||||||||| || Sbjct 980019 CTACCAACTGAGCTAACGACCCACTT 979994 Score = 111 bits (122), Expect = 3e-20 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 356 ATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTAC 415 |||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct 980586 ATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTAC 980527 Query 416 CGACTGAGCTAACGACCCAAT 436 | |||||||||||||||| || Sbjct 980526 CAACTGAGCTAACGACCCGAT 980506 Score = 111 bits (122), Expect = 3e-20 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 356 ATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTAC 415 |||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct 3034739 ATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTAC 3034680 Query 416 CGACTGAGCTAACGACCCAAT 436 | |||||||||||||||| || Sbjct 3034679 CAACTGAGCTAACGACCCGAT 3034659 Score = 109 bits (120), Expect = 1e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 ||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| Sbjct 980276 TTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACC 980217 Query 417 GACTGAGCTAACGACCCAAT 436 |||||||||||||||| || Sbjct 980216 AACTGAGCTAACGACCCGAT 980197 Score = 105 bits (116), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| Sbjct 980391 TGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCA 980332 Query 418 ACTGAGCTAACGACCC 433 |||||||||||||||| Sbjct 980331 ACTGAGCTAACGACCC 980316 >seq83 Length=912621 Score = 107 bits (118), Expect = 4e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 ||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| Sbjct 700982 TTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACC 700923 Query 417 GACTGAGCTAACGACCC 433 |||||||||||||||| Sbjct 700922 AACTGAGCTAACGACCC 700906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100696510328820