Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq620 201 3e-47 seq1959 104 6e-18 seq122 93.3 1e-14 >seq620 Length=44282 Score = 201 bits (222), Expect = 3e-47 Identities = 375/543 (69%), Gaps = 12/543 (2%) Strand=Plus/Plus Query 8753 GCGCTGGGGCTGACAAATACTGCTATCTCCCTTCAGTCCATCGATGATGAAGATAAAACC 8812 |||||||||||||| ||||| || | | | ||| | | |||||||| |||||| Sbjct 5785 GCGCTGGGGCTGACGAATACCGCAGTGGCATTACAGGCTGTTGATGATGAGGATAAATGT 5844 Query 8813 GAATATAAGGATTACTTAGGTTCGGGACGTAAGCCTTTGCTGGTCAATGAATCCGGGCTC 8872 ||| ||||||||||| ||||||| || || ||||| ||||||||||||| || || || Sbjct 5845 GAACATAAGGATTACATAGGTTCAGGCCGCAAGCCCCTGCTGGTCAATGAGTCAGGTCTT 5904 Query 8873 TATGCGCTGATTATCAAAAGTCGaaaaaaaCAGGCAAGACGTTTTAAACGGTGGATTACA 8932 || | || || | || || || || ||||| | ||| || || || ||| | || Sbjct 5905 TACACCCTCATCCTGAAGAGCCGCAAGCCTCAGGCCAAACGCTTCAAGCGCTGGGTCACT 5964 Query 8933 TCGGAGGTAATTCCGTCAATTCGTAAAACGGGGAATTACTGT-CTTACCA--CAATGACA 8989 | || || | ||||| ||||| |||||| || | || || ||| | Sbjct 5965 GCCGATGTGCTGCCGTCTATTCGCGCTACGGGGTCCTATGGCACTGTGCAGTCAAACGTA 6024 Query 8990 TCCCTACCAGATTTTAGCGATCCGGCTGCTGCTGCCCGTGCCTGGGCGGACGAATATGAG 9049 | | || || || | || || || |||| ||||||||||||||| || |||||||| Sbjct 6025 T---TGCCTGACTTCACAGACCCCGCGGCTGTTGCCCGTGCCTGGGCTGATGAATATGAA 6081 Query 9050 GCTAAAAACAGAGCAATTAGTTACGTTCATCGTCAGGCCCAATACATCGAACATCTGGAA 9109 | | | | || | |||||| || ||||| || |||||||| || || ||| Sbjct 6082 TCCCACCGCCGGGCCGTAGAATACGTTGGCCGCCAGGCTCAGTACATCGATCACCTCGAA 6141 Query 9110 AATTTATTCCAGCCTGGCATGACACCGGTTCAGTTCTGCAAGCAACTTAATGGAGTAAAT 9169 || | || ||||| |||||||| || | |||||||||||||| ||||| || || || Sbjct 6142 AACCTGTTTCAGCCGGGCATGACGCCTTTCCAGTTCTGCAAGCAGCTTAAAGGCGTCAAC 6201 Query 9170 GTTCAGCGCATCACAGCATTTCTGGAGGCTCACAACTGGCTTTATGACGAGCGTCCTGAA 9229 | | || | | || || ||||| | || |||||||| | || || || || | Sbjct 6202 ATCCGGCAGGTGAATGCCTTCCTGGAAGAACATAACTGGCTGTTCGATGACCGACCGAAT 6261 Query 9230 TC-GCGAAGCCCCGCATGGCGTGTAAAGGCA--TATGCCCGAGATCTGTATCTGACTGAA 9286 || ||| || ||| ||||| || ||||| ||||||||||| ||||| ||||||||| Sbjct 6262 TCTAAGAATCCACGC-TGGCGCGT--AGGCAACTATGCCCGAGACCTGTACCTGACTGAA 6318 Query 9287 CGT 9289 ||| Sbjct 6319 CGT 6321 Score = 116 bits (128), Expect = 1e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 13236 GCCCCATGAACTCAGACCTGAAAAATTCCGGGGAAATAGAGGCGGATGCAGACATCATTC 13295 |||| | ||| | |||||||| | ||||| || || ||||| ||||| |||||||| Sbjct 10769 GCCCGGTTAACGCCGACCTGAAGGACTCCGGCGAGATTGAGGCCGATGCCGACATCATCA 10828 Query 13296 TGATGCTTTACAGGGATGAAGTGTACAACCCGGATACGCAGGCCAGGGGCATCGCAGAAA 13355 ||||||| ||| | ||||||||||| ||||||| | | ||| | || || ||||||| Sbjct 10829 TGATGCTCTACCGCGATGAAGTGTATGACCCGGAATCCCCGGCGCGCGGTATTGCAGAAA 10888 Query 13356 TCAATATCACGAAACAACGTAACGGTTCTCTGGGGACGATTTATCGGCGTTTTTATAACG 13415 | || ||||| || | || ||||| | ||||| || | ||||| || || |||||| Sbjct 10889 TTAACATCACCAAGAATCGCAACGGCGCACTGGGCACAGTCTATCGCCGCTTCCATAACG 10948 Query 13416 GACATTT 13422 | || || Sbjct 10949 GTCACTT 10955 >seq1959 Length=43063 Score = 104 bits (114), Expect = 6e-18 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 17157 CGGCCCTTTAGCTAAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 17216 ||||||||||||| || ||| ||||| ||||||||||||||||||||| |||||||||| Sbjct 8111 CGGCCCTTTAGCTCAGCGGTTAGAGCTTGCGACTCATAATCGCCAGGTCACTGGTTCAAA 8170 Query 17217 TCCAGCAAGGGCCACCATAA 17236 ||||| ||||| ||||| || Sbjct 8171 TCCAGTAAGGGTCACCAAAA 8190 >seq122 Length=4874392 Score = 93.3 bits (102), Expect = 1e-14 Identities = 79/95 (83%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 17142 TTATTATCCTGCGCCC--GGCCCTTTAGCTAAGT-GGTGAGAGCGAGCGACTCATAATCG 17198 |||| |||||||||| ||||| ||||| ||| ||| ||||| |||||||||||||| Sbjct 217266 TTATAATCCTGCGCCTCAGGCCCCATAGCTCAGTTGGTTAGAGCACGCGACTCATAATCG 217207 Query 17199 CCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA 17233 | |||||||||||||| |||||| ||||||||| Sbjct 217206 CTTGGTCGCTGGTTCAAGTCCAGCTGGGGCCACCA 217172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136108276449222