Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq93 118 1e-21 seq45 116 5e-21 >seq93 Length=974399 Score = 118 bits (130), Expect = 1e-21 Identities = 162/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||| ||| || || ||| || || || || ||||| || || | ||| | Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 ||||||| || |||| ||||| |||||| ||||| || || || || || ||||||| Sbjct 914687 TAAGCCAGAAAATGGCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGG 914746 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 36356 |||| | || ||| || | |||| ||||| |||||||| |||||||||| Sbjct 914747 CAATTACTCGCTCAGCAAACGTGGCAGACTCATGAGCAATCCACTTCATGGCCCAATCGG 914806 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||||| || ||||| || | ||| || || |||||||| | ||| Sbjct 914807 CCTTCTTCTTCACACATGGGAGTGTTTCAATGGCATTAAATAAATA 914852 >seq45 Length=1811775 Score = 116 bits (128), Expect = 5e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 |||||||| || || |||| |||| |||| ||||| || || || | | ||| |||||| Sbjct 850495 TTGTTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATA 850554 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 |||||||| ||||||||||| || || | ||||| ||||| | ||||||||| | | Sbjct 850555 ATACCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATA-CAGTG 850613 Query 66330 ATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 | || | | ||| || || || || ||||| || || || || ||| | || || Sbjct 850614 AATGTTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTC 850673 Query 66389 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 66439 || ||||| || ||||||||||| |||| || || || || ||||| Sbjct 850674 GTAAATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCAACTAGA 850724 Score = 111 bits (122), Expect = 2e-19 Identities = 206/299 (69%), Gaps = 9/299 (3%) Strand=Plus/Plus Query 65619 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG---ACAATTACT 65675 ||||||| |||||||| || | ||| || |||||||| || ||| || ||| | || Sbjct 849755 TCTGGAACTGGATAATAGTTCACATCAATTATTTTATTCAGGTTTTTGGTCACAGT--CT 849812 Query 65676 TTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACATGTTC 65732 ||| | || || ||||| || | ||| || | | ||| | ||||||||||| Sbjct 849813 TTGTC-ACCTCTTTCAGCTTTACAAAGTCGTAGGTTTTGTCAGGCTTCACAAACATGTTA 849871 Query 65733 AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 65792 | ||||| ||||||| ||||||||| || | || | | | ||| | | ||| Sbjct 849872 ACGGCAACTGATGCCAAATTACAAACAGCAATTTCTGTCGGCGAGGAATACTCAACAATC 849931 Query 65793 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 65852 |||||||||||||| || | || || ||||||| ||| || ||||| || ||| Sbjct 849932 TCAGTGCAAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCGGTTG 849991 Query 65853 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 65911 || ||||| || || | ||| | || || |||||||| | ||||| || ||||| || Sbjct 849992 CAAGCATCTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGAGACTCAATAATGGC 850050 Score = 105 bits (116), Expect = 9e-18 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 64917 AAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGA 64976 |||||||| || || || |||| | || || |||||||||||||| | |||||| Sbjct 848718 AAATGCATGGATGTGAGCTTCCCATAATTTGGCTCAGCTATATGGATATTTAGTGATTGA 848777 Query 64977 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 65036 |||||| |||||||| || || || |||||||||||||| | || || |||| |||| Sbjct 848778 GATTGATCAATGAAGGCCCCTCTATCAGCAGCCATTTTTATAACAGTTTTCTGTGAAATT 848837 Query 65037 TCCCAAATAGTTTTATA-AACTCGCTTAATATCTT 65070 ||||||| ||||| || | ||| ||| || |||| Sbjct 848838 TCCCAAACTGTTTTGTATAGCTC-CTTGATTTCTT 848871 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || || || ||||| || ||||| |||| ||||||||||| || || | || | | Sbjct 849141 ACCTGGAACTCTCCTGATAATACCCTCCTTGTGTAAATATTTGATGTGTAGGCCTCAATA 849200 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||||||| || || ||||| ||||| ||||||||||| | ||||||| Sbjct 849201 GACTCATTATTACCCAAAATCTGCGCTGTTGAGGCAGTTGGCATAGGTGCAAGCAATAAA 849260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658121273296920