Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq620 152 1e-32 >seq620 Length=44282 Score = 152 bits (168), Expect = 1e-32 Identities = 213/298 (71%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 28305 ATGAGTATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCCATTGCGAAAA 28364 ||||| ||||| | ||||| || || ||||||| |||||| || || | || ||| Sbjct 6818 ATGAGCATGGAATTAATGGTCAAGGCCATGAAAACCAAAGTGGGAAACCCGCTTCGGAAA 6877 Query 28365 CTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCTAT 28424 ||||||| | |||||||| ||||||||||| || | || || |||||||| ||| | Sbjct 6878 TTGGTTCTCCTGAAGCTGGCAGATAATGCCAGTGACAAAGGCGAATGCTGGCCGAGCCTT 6937 Query 28425 CAGCATATCGCTGATCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCATATTGCGGCC 28484 | | ||||| |||||||| ||||| || ||||| ||||| ||||| || | || Sbjct 6938 CGTAACATCGCCGATCAGTGTGAGATAAGTCGCCGTTCGGTGATAAATCACATCGATGCT 6997 Query 28485 CTCTGTGAGTCCGGGCTGGTaaaaaaaG----TCACCCGGAAAGGTGAAAAAGGTAACTC 28540 || ||||| | || || | | ||||| || ||| || | ||||| || || Sbjct 6998 CTTTGTGAATTTGGCCTCCTGAGAAAAGAGCATCGCCC----TGGCGTCAAAGGGAATTC 7053 Query 28541 AAGTAATATCTATCTCCTTCATCTGGATGGTGCAGGAGATTCACTAGGGGGTAGTGCA 28598 ||| ||| |||| ||| | | ||||||||||||||| ||| ||||||||||||| Sbjct 7054 AAGCAATCTCTACTACCTGACTTTAGATGGTGCAGGAGATGCACCAGGGGGTAGTGCA 7111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118506385654216