Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq45 116 5e-21 seq93 114 2e-20 >seq45 Length=1811775 Score = 116 bits (128), Expect = 5e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 |||||||| || || |||| |||| |||| ||||| || || || | | ||| |||||| Sbjct 850495 TTGTTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATA 850554 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 |||||||| ||||||||||| || || | ||||| ||||| ||||||||||| | | Sbjct 850555 ATACCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATA-CAGTG 850613 Query 80209 ATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 | || | | ||| || || || || ||||| || || || || ||| | || || Sbjct 850614 AATGTTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTC 850673 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGA 80318 || ||||| || || |||||||| |||| || || || || ||||| Sbjct 850674 GTAAATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCAACTAGA 850724 Score = 107 bits (118), Expect = 3e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 78795 GAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTG 78854 ||||||||| || || || |||| | || || |||||||||||||| | ||||| Sbjct 848717 GAAATGCATGGATGTGAGCTTCCCATAATTTGGCTCAGCTATATGGATATTTAGTGATTG 848776 Query 78855 ACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAAT 78914 | |||||| |||||||| || || || |||||||||||||| | || || |||| ||| Sbjct 848777 AGATTGATCAATGAAGGCCCCTCTATCAGCAGCCATTTTTATAACAGTTTTCTGTGAAAT 848836 Query 78915 TTCCCAAATAGTTTTATA-AACTCGCTTAATATCTT 78949 |||||||| ||||| || | ||| ||| || |||| Sbjct 848837 TTCCCAAACTGTTTTGTATAGCTC-CTTGATTTCTT 848871 Score = 107 bits (118), Expect = 3e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || || || ||||| || ||||| |||| ||||||||||| || || | || | Sbjct 849141 ACCTGGAACTCTCCTGATAATACCCTCCTTGTGTAAATATTTGATGTGTAGGCCTCAATA 849200 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||||||| || || ||||| || |||||||||||||| | ||||||| Sbjct 849201 GACTCATTATTACCCAAAATCTGCGCTGTTGAGGCAGTTGGCATAGGTGCAAGCAATAAA 849260 Query 79180 CTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGAT 79237 || || | ||| ||| | || || || || || ||||||||||| || | Sbjct 849261 GAGTTCCTCACACC--ATGTTTTGCAATCTTGCTACGTAAAGCATCCCAATCCCAGAGTT 849318 Query 79238 CAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 |||||| |||||||| | ||| ||||||||| Sbjct 849319 TAGACGGTGTCACATTCCACATGTCAGGTTGTAGAAT 849355 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || || | ||| ||||| ||| | ||| | || | || || |||||||| || || Sbjct 850792 CTTGAAAGTTGAGGACGAGGAGTAGCAGCACTGAACAGAGTGGGTGAAGCGTGAGTGAAA 850851 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 || | ||||||||||| ||||| || ||||| || | || ||||| |||||| Sbjct 850852 TATCTCTCAGACAGTAGGTTGTAAGTTTCAATGGCAGCATCAATATCATCCCCATGAATA 850911 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 || || || || | ||| |||||||| ||||| | |||||| | ||| || || Sbjct 850912 CCAACAGCAACCCTCATCAACATGTGTTGAGGACGTTCAACAACCTTACCGCCAATCTT- 850970 Query 80494 AACAAG-TAAGATTTTTCCAAAGTTTTAAA 80522 || ||| || ||| |||||||||| | ||| Sbjct 850971 AAGAAGATATGATCTTTCCAAAGTCTGAAA 851000 >seq93 Length=974399 Score = 114 bits (126), Expect = 2e-20 Identities = 144/197 (73%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || || ||||| || || | ||| |||||||| || |||| ||||| ||| Sbjct 914656 AAGGTAAGACCTGGCATAAGCCCTCTCTTCTTAAGCCAGAAAATGGCAGCAAAGCTTCCA 914715 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || |||||||| || || || || |||||||||| | || ||| || | |||| Sbjct 914716 GAGAAGAAGATACCCTCCACAGCAGCAAAGGCAATTACTCGCTCAGCAAACGTGGCAGAC 914775 Query 50131 TCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 ||||| |||||||| ||||||||||||||||| || ||||| || | ||||| Sbjct 914776 TCATGAGCAATCCACTTCATGGCCCAATCGGCCTTCTTCTTCACACATGGGAGTGTTTCA 914835 Query 50188 ATGGCATTAAAGAGATA 50204 ||||||||||| | ||| Sbjct 914836 ATGGCATTAAATAAATA 914852 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || || ||||| || | ||| |||||||| || |||| ||||| || || |||||||| Sbjct 914959 TATGTGTCGATTAACAAACTGTACATTTCTGAGTGAACATTTTCCATTGCAATCTGAAAG 915018 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 || ||||| || | || || || | ||| |||||| || |||| ||| |||| ||| Sbjct 915019 CCATAGAAGCACCGTGCTTCTGTTACCTGAACTTCTTGACTGAATCTTTCCACTAAGTTT 915078 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 ||||| || || || ||| || ||||| || || | ||||| ||||||||||| Sbjct 915079 TCATTGACAATCCCATCAGAAGCAGCAAAGAAGGCAAGGACATGGGAGATAAAATGTTTC 915138 Query 50410 TC 50411 || Sbjct 915139 TC 915140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718212568531320