Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq93 127 3e-24 seq45 118 1e-21 >seq93 Length=974399 Score = 127 bits (140), Expect = 3e-24 Identities = 164/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||| ||| || || ||| || || || || ||||| || || | ||| | Sbjct 914627 CCTCATCTCGTGAAATCAACTCATTGCTGAAGGTAAGACCTGGCATAAGCCCTCTCTTCT 914686 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 ||||||| || || | ||||| |||||| |||||||| || || || || ||||||| Sbjct 914687 TAAGCCAGAAAATGGCAGCAAAGCTTCCAGAGAAGAAGATACCCTCCACAGCAGCAAAGG 914746 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACTTTTGAGCCCAATCGG 42263 |||| | || ||| || | |||| ||||| |||||||| |||||||||| Sbjct 914747 CAATTACTCGCTCAGCAAACGTGGCAGACTCATGAGCAATCCACTTCATGGCCCAATCGG 914806 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||||| || ||||| || | ||||| ||||||||||| | ||| Sbjct 914807 CCTTCTTCTTCACACATGGGAGTGTTTCAATGGCATTAAATAAATA 914852 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 ||||| ||||| || | ||| ||||||||||| |||| ||||| || || |||||||| Sbjct 914959 TATGTGTCGATTAACAAACTGTACATTTCTGAGTGAACATTTTCCATTGCAATCTGAAAG 915018 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 || ||||| || | || || || ||||| |||||| || |||| ||| |||| ||| Sbjct 915019 CCATAGAAGCACCGTGCTTCTGTTACCTGAACTTCTTGACTGAATCTTTCCACTAAGTTT 915078 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 || || || || || ||| || ||||| || || | ||||| ||||||| ||| Sbjct 915079 TCATTGACAATCCCATCAGAAGCAGCAAAGAAGGCAAGGACATGGGAGATAAAATGTTTC 915138 Query 42515 TCGTCC 42520 || ||| Sbjct 915139 TCATCC 915144 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 5/138 (4%) Strand=Plus/Plus Query 41720 TAAAAGTCAACATCTAAAGAAAAATGATTGTC----TTCTTGAGACATAACTCCCATTTT 41775 ||||||||| ||||||||| ||| ||| || || || || ||| |||||| || Sbjct 914091 TAAAAGTCAGCATCTAAAGTAAACACATTCTCCGCCTTATT-AGCCATCACTCCCCACTT 914149 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 || |||||||| || ||||| || ||||||||||| ||||| ||||| || | || Sbjct 914150 CTGATATTCACCAACTTTCTTTTCAAAGAAATTAGTCTTGCCTTCTAATGAGATGTGCTC 914209 Query 41836 CATGAAATCAAACGGATT 41853 |||||| ||||| || || Sbjct 914210 CATGAAGTCAAATGGGTT 914227 >seq45 Length=1811775 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 |||||||| || || |||| |||| |||| ||||| || || || | | ||| |||||| Sbjct 850495 TTGTTTCCACCTTGGTCTACGTATTTAGCTGTGTTGTTGTACACACGAAGCATGGGAATA 850554 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTA 72291 |||||||| |||| |||||| || || | ||||| ||||| ||||||||||| | | Sbjct 850555 ATACCATTTGATGTACCATTAGTGCCAGCAATATAACTTCCCTTGGCACGAATACAGTGA 850614 Query 72292 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 72351 || | ||| || || || || ||||| || || || || ||| | || || Sbjct 850615 ATGTTAACACCAATACCTCCAGCTGACTTAGAAATCAAAGCACAGTCTTTCAGTGTGTCG 850674 Query 72352 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 72401 || ||||| || ||||||||||| |||| || || || || ||||| Sbjct 850675 TAAATGCCTTCAATACTATCATCTTTCATAGACAGCAGGAAGCAACTAGA 850724 Score = 102 bits (112), Expect = 1e-16 Identities = 228/336 (68%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 71581 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG---ACTATTACT 71637 ||||||| |||||||| || | ||| || |||||||| || ||| || || | || Sbjct 849755 TCTGGAACTGGATAATAGTTCACATCAATTATTTTATTCAGGTTTTTGGTCACAGT--CT 849812 Query 71638 TTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCTATTACAAACACGTTC 71694 ||| | || || || || || | ||| || | | | || | ||||||| ||| Sbjct 849813 TTGTC-ACCTCTTTCAGCTTTACAAAGTCGTAGGTTTTGTCAGGCTTCACAAACATGTTA 849871 Query 71695 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATT 71754 | |||||| ||||||| ||||||||| || | || | | || ||| | | ||| Sbjct 849872 ACGGCAACTGATGCCAAATTACAAACAGCAATTTCTGTCGGCGAGGAATACTCAACAATC 849931 Query 71755 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 71814 |||||||||||||| || | || || ||||||| ||| || ||||| || ||| Sbjct 849932 TCAGTGCAAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCGGTTG 849991 Query 71815 CACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 || ||||| || || | || | || || |||||||| | ||||| || ||||| || Sbjct 849992 CAAGCATCTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGAGACTCAATAATGGCC 850051 Query 71875 TTCCA-GACGACTCGAGCCTTTATTATATTCTTGTA 71909 ||| || || |||| |||||| ||| |||| Sbjct 850052 AACCACAACTGCT-GAGCATTTATTTGTTTCATGTA 850086 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || || || ||||| || ||||| || | ||||||||||| || || | || | Sbjct 849141 ACCTGGAACTCTCCTGATAATACCCTCCTTGTGTAAATATTTGATGTGTAGGCCTCAATA 849200 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||||||| || || ||||| ||||| ||||||||||| | ||||| | Sbjct 849201 GACTCATTATTACCCAAAATCTGCGCTGTTGAGGCAGTTGGCATAGGTGCAAGCAATAAA 849260 Query 71263 CTATTTCTAAGACCATGT 71280 || || | ||||||| Sbjct 849261 GAGTTCCTCACACCATGT 849278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || ||||| || ||||| | || ||| |||||| |||||||| || || || ||| Sbjct 848748 GGCTCAGCTATATGGATATTTAGTGATTGAGATTGATCAATGAAGGCCCCTCTATCAGCA 848807 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAAT 71027 ||||||||||| | || || |||| ||||||||||| ||||| || | ||| ||| || Sbjct 848808 GCCATTTTTATAACAGTTTTCTGTGAAATTTCCCAAACTGTTTTGTATAGCTC-CTTGAT 848866 Query 71028 ATCTT 71032 |||| Sbjct 848867 TTCTT 848871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671086658189880