Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq45 100 3e-16 seq43 100 3e-16 >seq45 Length=1811775 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 157049 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTC-GTCGGGCGCGCAATATTGTAC 157107 || ||||||| || || | |||||| || ||| |||| ||||| || | |||| | || Sbjct 849869 TTAACGGCAACTGATGCCAAATTACAAACAGCAATTTCTGTCGG-CGAGGAATACTCAAC 849927 Query 157108 TATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCG 157167 || || | || | |||||||| ||| || ||| ||| |||||| |||||| Sbjct 849928 AATCTCAGTGCAAAGATTGCTGCTTTTAATTGTTCCTACATTCTGCTGATTGGATTTGCG 849987 Query 157168 GTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGA 157216 ||||||||| || ||||| |||||||| |||||||| ||||| ||||| Sbjct 849988 GTTGCAAGCATCTTTGTACAACATGTAAGGTGTGCCAGTTTCTACTTGA 850036 >seq43 Length=2082672 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || |||||||| || | ||| | || || || || || || ||||| || Sbjct 901303 TGCCCACCGCGCAAACGCAAGACAAGATGTAAAGTGGACTCCTTCTGGATATTGTAGTCA 901244 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || |||| ||||| || || || |||||| |||||| ||| |||||||| || Sbjct 901243 GACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGATCTGGG 901184 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || |||||||||||||| ||||| |||| | || | | || | |||||| Sbjct 901183 GGGATGCCTTCTTTGTCTTGGATTTTGGCCTTTACGTTCTCAATAGAATCAGAGGGTTCA 901124 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | ||| | |||||||| || | ||| || || || || ||||| Sbjct 901123 ACTTCCAGAGTAATGGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 901074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506974707110160