Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq620 145 2e-30 >seq620 Length=44282 Score = 145 bits (160), Expect = 2e-30 Identities = 218/308 (71%), Gaps = 10/308 (3%) Strand=Plus/Plus Query 31017 GGTGCTGC--ATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCC 31074 |||| ||| ||||||||||| | ||||| || || ||||||| |||||| || || Sbjct 6808 GGTGGTGCCTATGAGCATGGAATTAATGGTCAAGGCCATGAAAACCAAAGTGGGAAACCC 6867 Query 31075 ATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTG 31134 | || ||| ||||||| | |||||||| ||||||||||| || | || || ||||| Sbjct 6868 GCTTCGGAAATTGGTTCTCCTGAAGCTGGCAGATAATGCCAGTGACAAAGGCGAATGCTG 6927 Query 31135 GCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCA 31194 ||| ||| | | || || || ||||| ||||| || ||||| ||||| ||||| Sbjct 6928 GCCGAGCCTTCGTAACATCGCCGATCAGTGTGAGATAAGTCGCCGTTCGGTGATAAATCA 6987 Query 31195 TATTGCGGCCCTTTGTGAGTCCGGGCTGGTaaaaaaaG----TCACCCGGAAAGGTGAAA 31250 || | || |||||||| | || || | | ||||| || ||| || | | Sbjct 6988 CATCGATGCTCTTTGTGAATTTGGCCTCCTGAGAAAAGAGCATCGCCC----TGGCGTCA 7043 Query 31251 AAGGTAACTCAAGTAATATCTATCTCCTTCATCTGGATGGTGCAGGAGATTCACTAGGGG 31310 |||| || ||||| ||| |||| ||| | | ||||||||||||||| ||| ||||| Sbjct 7044 AAGGGAATTCAAGCAATCTCTACTACCTGACTTTAGATGGTGCAGGAGATGCACCAGGGG 7103 Query 31311 GGAGTGCA 31318 | |||||| Sbjct 7104 GTAGTGCA 7111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128345653822666