Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_004348.1 Length=40679 Score E Sequences producing significant alignments: (Bits) Value seq1959 154 4e-33 >seq1959 Length=43063 Score = 154 bits (170), Expect = 4e-33 Identities = 219/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 21382 AAACGTATGAATGACGACCATAAAATTGTAGGCCTGTCCTGGCTAATTCTGCTTGGAATT 21441 ||||||||| | ||| | | | ||| || | || ||||| || | || | || Sbjct 8710 AAACGTATGCAAGACAAAGAGAGCGTTGCTGGTATTTCATGGCTTATCGTTCTGGCTATC 8769 Query 21442 GCCTGCTGGGGCGGCTTAGTTCGCTACCTGATTGACGTAAAGCAGAATAAAGCAACATGG 21501 || || ||||| ||| | |||||||| || || ||| | ||| | ||||| || |||||| Sbjct 8770 GCGTGTTGGGGTGGCCTGGTTCGCTATCTCATAGACATCAAGAACAATAAGGCCACATGG 8829 Query 21502 AGTTGGATAAACGCTTTCGCACAGATCGCGGTATCTGGCTTTACCGGTCTGATTGGCGGG 21561 || ||||| |||||| || | ||||| | || || || ||||| || | || || ||| Sbjct 8830 AGCTGGATTAACGCTGTCTCTCAGATGGTTGTTTCCGGTTTTACTGGCGTTATCGGTGGG 8889 Query 21562 TTGATAAGCGTTGAGGGTGGGCTTAGTTTTCACATGATCCTGGTAACGTCGGGAATTAGC 21621 | || ||||||||| | ||| | || || | || ||||||| || || || || || Sbjct 8890 CTAATCAGCGTTGAGAGCGGGTTCAGCCTTTATATCATCCTGGCGACTTCCGGCATGAGT 8949 Query 21622 GGGGCAATGGGTTCCGTTGCTCTAACCTACTTCTGGGAGCGTCTTACAGGGATGAAAAAT 21681 || ||||||||||| ||||| || | || || |||||| | |||| || |||| ||| Sbjct 8950 GGTGCAATGGGTTCTGTTGCGCTGTCTTATTTTTGGGAGAGAATTACTGGAGTGAAGAAT 9009 Query 21682 GCAAACCA 21689 ||||| || Sbjct 9010 GCAAATCA 9017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130041527685846