Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq122 863 0.0 seq1959 91.5 5e-14 >seq122 Length=4874392 Score = 863 bits (956), Expect = 0.0 Identities = 1559/2256 (69%), Gaps = 64/2256 (3%) Strand=Plus/Minus Query 29568 AGCCAGGGCTGGAAGCTGGGCGGGGCCATAAAAACCACCGAGCGCAAACTGGCTGAGGGA 29627 || ||||| |||||||| ||||| ||| || || |||||||| ||||| || || || Sbjct 2951879 AGTCAGGGGTGGAAGCTCGGCGGTGCCTGTAAGACGACCGAGCGTAAACTTGCCGAAGGC 2951820 Query 29628 GTACTGGTGCATGGTGGTCAGCCACTGATGGCCTGGTGCGTTGGCAATGCCCGGGTGGAG 29687 | || ||||| |||||| |||||| ||||||||| || ||||| |||| Sbjct 2951819 GCTCTCAGGCATGCGCCTCAGCCGCTGATGAACTGGTGCGTGGGTAATGCAAAAGTGGTC 2951760 Query 29688 CCTAAAGGTAACGCCATTCTTATTACCAAACAGGCCAGCGGACGGGGGAAAATTGACCCG 29747 | || || ||| || | || ||| ||||||||| || ||||| ||||| Sbjct 2951759 ATCAGCGGAAATGCCCCACTGGTAACTAAAGGGGCCAGCGGGATCGGTAAAATCGACCCA 2951700 Query 29748 CTGATGGCGCTCTTCAATGCGGTATCCCTGATGTCCCTGAATCCGGAGCCGAAAAAGAAA 29807 | ||||| || || || || | | ||||| | ||||| ||| | | || ||| Sbjct 2951699 TTAATGGCACTTTTTAACGCCATTTTTTTGATGGCACTGAACCCGTCAGCAACCAAAAAA 2951640 Query 29808 GAATATGCGGtttttttCATATAACCCTGTTCACCCTGTAACCATCATGGACCGCTGCGG 29867 || || || |||||||| || | || | || | | | | ||||| | Sbjct 2951639 GATTACAGCGTGTTTTTCATTTAGAAAT--TC-CGCTCTCAACGAC-----CCGCTCACG 2951588 Query 29868 CGGtttttttATTTTCAGGAGGCTG--ATGTGACTCTTAAACGGGCCTGCTCCCTGCTGA 29925 ||| |||||| |||| |||| | | ||| | | | ||| | ||| || | Sbjct 2951587 CGGGTTTTTTCGTTTCTGGAGAAAGGGAAATGAAGAATCAGCACGCCGTCAGCCTTCTTA 2951528 Query 29926 CGGTGAAATCCTTCAGTGAGGATGAGCGGGTGATCACCGGGATTGCGTCAACGCCTTCTC 29985 ||| || | | | |||||| ||||| ||||| || |||||| |||||||||| | Sbjct 2951527 AGGTTAAGGCGGTAAACGAGGATACGCGGGAAATCACGGGTATTGCGACAACGCCTTCAC 2951468 Query 29986 CGGATCGGGATGGTGACATCCTGGAGCCGGAGGGGGCGGAGTTTGGCAGTGCGC--TCCC 30043 ||||||| |||| ||||| || ||| |||||||| ||||| |||| | |||| Sbjct 2951467 CGGATCGCTATGGCGACATAGTGATGCCCGAGGGGGCAAAGTTT--CAGTTACCCATCCC 2951410 Query 30044 GTTTCTCTGGCAGCATGACCATTCCCGCCCTGTGGGGCAGTGTACG-GTGCGCCGG-GTC 30101 | | ||||||||||| |||||| ||||| || ||| || ||||| || | | Sbjct 2951409 GCTGCTCTGGCAGCACGACCATCAGTCTCCTGTAGGACAGGTCACCAGTGCGAAGGTGAC 2951350 Query 30102 AGCGAAGGGC-TGGAAATCACGGCAACACTGGCGAAGCCCGTGCCGGATATGCCATCGCA 30160 || |||| | ||||| | || || ||||| || | ||| || || Sbjct 2951349 CGCCGAGGGAATTGAAATTAAAGCCACCCTGGCAAAAGC------GGACTCACCGAGCCA 2951296 Query 30161 ACTGGCTGCCAGGCTGGATGAGGCCTGGGCGGCCATTAAGACCGGGCTGGTCAGGGGGCT 30220 || || |||||||| || ||||| ||| ||| || || || | ||| | Sbjct 2951295 GCTTGCCGCCAGGCTTGAAGAGGCATGGCAAAGCATCCGCCTTGGTCTTGTGAAAGGGTT 2951236 Query 30221 GTCCGTGGGCTTCCGTCCTCATGAATACACCTTTCTGGACGGAGGCGGACTGCATTTTCT 30280 ||| | ||||| || || ||||||| ||| | | |||| ||||| | | | | Sbjct 2951235 GTCAATCGGCTTTCGGCCAATTGAATACGCCTATATCGACGAGGGCGGCGTCCGCTATAC 2951176 Query 30281 GCGCTGGGAGCTGATGGAGGTGTCTGCCGTCACCGTGCCCGCGAATGCGGAATGCACCAT 30340 |||||||| | || | || | || || ||||| || || || ||| ||||||| Sbjct 2951175 CAGCTGGGAGTGGTACGAACTCTCCGTTGTAACGGTGCCGGCCAACGCCGAAGGCACCAT 2951116 Query 30341 CCGGACCATTAAATCTTACGACCGCCAGTTTTC-TGCCGCGTCCGGCAA-CCGGAAACCG 30398 || |||| |||||||| |||| | || | | ||||||||| ||||| ||| ||| || Sbjct 2951115 CCAGACCGTTAAATCTATCGAC-GAAAGACTGCGTGCCGCGTCAGGCAAACCGCAAATCG 2951057 Query 30399 GTGGTGAAAATCGCATCTTCTGCCGGCGCTGCGGCACAGTCAACAACCGTTTTTCATAAG 30458 | ||||| || | ||||| |||||| | ||||| || ||| | ||| | Sbjct 2951056 C-GTCGAAAACCGAAAAATCTGCTGGCGCTACAGCACAA--AAAAAC----TCTCAGACT 2951004 Query 30459 GAAAAGAC-CATAATGAATATTGGCGAACAGATTAAAAGTTTTGAAAACAAGCGTGCAGC 30517 ||| || || |||||| ||| ||| |||||||||| || |||| ||| || || | Sbjct 2951003 -AAAGGATTCAAAATGAACATTTCCGAGCAGATTAAAACCTTCGAAACCAAACGCGCTAC 2950945 Query 30518 GCTGGCAGCCTCCCTTGAGGAGGTCATGACCAAAGCCGCAGAGGAAGGGCGCACGCTGGA 30577 || | || | | ||| ||| ||| |||| | || ||||| |||||||| || Sbjct 2950944 CCTCGATGCTGAGCGTCAGGCGGTTATGTCCAAGTCTTTCGATGAAGGCCGCACGCTTGA 2950885 Query 30578 TGTGGAGGAGGAAGAGCATTACGACAACACCGCAGCGGAAATCCGTCAGGTGGATGCGCA 30637 | ||| || |||||| | |||||| | |||||||| |||||||| || Sbjct 2950884 TACGGAAGAAGAAGAGAAATACGACGAGGTGAGCGCGGAAATTAAATCCGTGGATGCTCA 2950825 Query 30638 CCTGAAGCGCCTGCGTGAACTGGAAGCCGGTAAGGCCGCCACGGCGCAGCCGGT---GAA 30694 |||| |||||||| || ||||| | | ||| ||| | ||||| |||||||| ||| Sbjct 2950824 CCTGGCACGCCTGCGCGACATGGAATCGGCTAAAGCCTCAACGGCTCAGCCGGTTCAGAA 2950765 Query 30695 A-CAG--GCCGGTAACGGG----AATGTGGCCG-----CGGTGGCTTCTGCGCCTGTGAT 30742 | ||| | |||| ||| ||| || || || | || ||||| || || Sbjct 2950764 AGCAGCGGGCGGTG-CGGTTGTAAATACGGTCGATACCCGCT--CTCCTGCG---GTAAT 2950711 Query 30743 CCGTGTGGAGCAGAAACTGGATAAGGGGATTGGTTTCGCACGTTTTGCCAAATCGCTGGC 30802 |||||| ||| | ||||| ||||| || | ||| || ||||| ||||| || ||||| Sbjct 2950710 CCGTGTTGAGAAACCGCTGGAAAAGGGTATCGCTTTTGCCCGTTTCGCCAAGTCACTGGC 2950651 Query 30803 TGCGGCTAAAGGTGTCCGCTCTGAAGCCCTGGAAGTGGCCCGTCGTCAGTATCCGGATGA 30862 ||| || || ||| |||| | ||||| |||| | ||| |||||||| | Sbjct 2950650 TGCAGCCAACGGTAGCCGCACAGAAGCGCTGGCCATCGCCAAAAACCAGTATCCCCAAA- 2950592 Query 30863 CAGTCGTCTGCATCATGTCCTGAAATCGGCAGTGGGCGCGGGGACCACCACGGATCCGCA 30922 |||||||| || | ||| | || || || || | ||||| || |||||| Sbjct 2950591 -------CTGCATCACGTATTAAAAGCTGCGGTTGGAGCAGCCACCACTACCGATCCGAC 2950539 Query 30923 GTGGGCAGGCAGCCTGTCTGAATATCAGGAATACGCACAGGACTTTATTGATTACCTGCG 30982 ||||| ||||||||| ||||| ||||| || || ||||||||||| || | |||||| Sbjct 2950538 ATGGGCTGGCAGCCTGGTGGAATACCAGGAGTATGCTCAGGACTTTATCGAGTTCCTGCG 2950479 Query 30983 TCCTCAGACCATTATCGGGCGATTTGGTCAGGGCGGGATCCCTGCACTTCGTCAGGTGCC 31042 |||||||| | || || ||||| |||||||| ||||||| || ||| ||||| Sbjct 2950478 CCCTCAGACACTGATTGGCCGATTCGGTCAGGGAAATATCCCTGGGCTGCGTAGCGTGCC 2950419 Query 31043 GTTCAATATCCGTGTGCACGCCCAGGTGTCGGGCGGTGCTGCCGGCTGGGTGGGTGAGGG 31102 ||||| | || | | || ||| ||||| ||| | ||| ||||||| ||| |||| Sbjct 2950418 ATTCAACGTGCGCATTCCTGCGCAGACTTCGGGTGGTTCGGCCAGCTGGGTTGGTCAGGG 2950359 Query 31103 TAAGACAAAACCCCTGACGAAGTTTGATTTTGAATCCATCACCTTCAGTCATGCGAAGGT 31162 ||| |||| || ||||||||||| || || ||||||||||||||| | ||| ||||| Sbjct 2950358 TAAAGCAAAGCCGCTGACGAAGTTCGACTTCGAATCCATCACCTTCGGCTTTGCCAAGGT 2950299 Query 31163 GTCGGCCATTGCGGTACTGACGGAAGAATTGATCCGTTTTTCCAGTCCGGCTGCTGATGC 31222 | |||| || ||||| || || || || ||||||| || || | || || |||||||| Sbjct 2950298 GGCGGCAATCGCGGTTCTTACCGATGAGCTGATCCGCTTCTCTAACCCTGCCGCTGATGC 2950239 Query 31223 ACTGGTCCGTAATGCGCTGGCGGAAGCGGTGGTGGCGCGTCTGGATACAGACTTTGTGGA 31282 |||||| ||||| |||||||| ||||| || | ||||| || ||||| ||||| | || Sbjct 2950238 ACTGGTGCGTAACGCGCTGGCAGAAGCAGTTATCGCGCGGCTTGATACTGACTTCATCGA 2950179 Query 31283 CCCGAAAAAAGCGGCGGTGGCAGATGTCTCCCCGGCGTCCATCACCCATGATGTGAAGGG 31342 ||||| |||||| | || || | || || ||||| |||||||| | | | || Sbjct 2950178 CCCGACAAAAGCTGAAGTCGCTAACGTTTCACCGGCTTCCATCACTAACGGCATTCCCGG 2950119 Query 31343 CACGGCCTCAAGCGGTAACCCGGATGCGGATGCAGAGGCGGCGTTTGGACAGTTTGTTGC 31402 || | || | ||| || || |||| ||||| ||||| |||| | ||||| | Sbjct 2950118 CATCCCGTCTACCGGAAATCCTGATGATGATGCCTCAGCGGCATTTGCAACATTTGTGAC 2950059 Query 31403 AGCAAACCTGCAGCCCACCGGTGCGGTCTGGCTGATGTCCAGCACCAATGCTCTGGCGCT 31462 || |||| ||||| ||||| || |||||||||||||||||||| | || ||| | || Sbjct 2950058 CGCCGACCTCCAGCCGACCGGCGCAGTCTGGCTGATGTCCAGCACTACCGCGCTGTCTCT 2949999 Query 31463 GTCCATGCGTAAAAATGCGCTGGGTCAGAAAGAATACCCGGACATGACCCTGCTGGGTGG 31522 ||| |||||||||||||||||||| ||||| ||||||||||| |||||| |||| || || Sbjct 2949998 GTCTATGCGTAAAAATGCGCTGGGGCAGAAGGAATACCCGGATATGACCATGCTCGGCGG 2949939 Query 31523 CTCCTTCCAGGGGCTGCCGGTGATTGTCTCCCAGTACGTGGGTGACCAGCTGGTGCTGGT 31582 | |||||||| || ||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 2949938 TACTTTCCAGGGCCTTCCGGTCATCGTCTCGCAGTATGTGGGAACTCAGCTGGTGCTGGT 2949879 Query 31583 GAATGCCCCGGATATTTATCTGGCGGATGACGGCGGCGTGGCAGTGGATATGTCCCGCGA 31642 ||||| || ||||| |||||||| ||||| ||||| || || || || ||||| ||||| Sbjct 2949878 CAATGCACCTGATATCTATCTGGCCGATGATGGCGGTGTCGCTGTCGACATGTCTCGCGA 2949819 Query 31643 GGCATCACTGGAAATGCAGTCTGAGCCGACCGGCGACAGTACCACGCCGTCGCCGGTGGA 31702 ||||| ||||| ||| | ||||||||| ||||| || || || | |||||||| Sbjct 2949818 AGCATCGCTGGAGATGTCCACCACGCCGACCGGTGACAGCACGACACCAACTCCGGTGGA 2949759 Query 31703 GCTGGTTTCCATGTTCCAGACAGGCAGCGTGGCCATCCGTGCGGAGCGCTGGATCAACTG 31762 | ||||||||||||||||||| ||||||||||||||| || || |||||||| ||||| Sbjct 2949758 GATGGTTTCCATGTTCCAGACCAACAGCGTGGCCATCCGCGCCGAACGCTGGATTAACTG 2949699 Query 31763 GCGTCGTCGCCGTACCGCGGCGGTGGCGGTGATCAC 31798 | || ||||||| ||| || || || || ||||| Sbjct 2949698 GAAGCGCCGCCGTAACGCAGCAGTTGCCGTTATCAC 2949663 >seq1959 Length=43063 Score = 91.5 bits (100), Expect = 5e-14 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 26002 ACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCTGCGCTCGATGCAAAATACTCG 26061 || || || ||||||||| |||||||| ||||||||||| ||||| ||||| ||| | Sbjct 9628 ACAATCACCGACATGCAGACACGCCAGCGCGATGTTGCTGCACTCGACGCAAAGTACACA 9687 Query 26062 AGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGT 26121 | ||||||||| ||||| | ||| || || |||| || || ||||| | ||| Sbjct 9688 AAGGAGTTAGCTGATGCTAAAGCCAGTAACGATTCTCTCCGCAATGCTGTTGATGATGGC 9747 Query 26122 CGTAAGCGCCTGCGCATC 26139 || ||||| |||||||| Sbjct 9748 CGCAAGCGGTTGCGCATC 9765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185240622051352