Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq122 181 1e-40 seq83 167 3e-36 >seq122 Length=4874392 Score = 181 bits (200), Expect = 1e-40 Identities = 150/183 (82%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 62063 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 62122 ||| || || |||||||||||||| | || ||||| ||||||||||| || |||| ||| Sbjct 3215637 TTAAAGGCTTTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGA 3215696 Query 62123 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 62182 |||||| || || ||||||||||| || || |||||||||||||||||||| ||||| || Sbjct 3215697 GTTAAAACGCACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTG 3215756 Query 62183 CTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACC 62242 ||| || || |||||||| ||||| || | ||| | ||| |||||||| || ||||| || Sbjct 3215757 CTTCACCGCCTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCC 3215816 Query 62243 TTC 62245 || Sbjct 3215817 CTC 3215819 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 62070 CTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAG 62129 |||| ||| |||||||| | ||| || || |||||||||| |||||| ||||| || Sbjct 1181315 CTCTGAGTGAAGGTACGGGTGATCACATCCTGCTGCTGTTCTTTAGTCAGCGAGTTGAAA 1181374 Query 62130 CGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACT 62189 || || ||||| || || || || ||||| | |||||||||||||||||| | | | Sbjct 1181375 CGTACCGCATAGCCCGACACGCGAATGGTTAACTGCGGATATTTTTCCGGGTCTTCCATC 1181434 Query 62190 GCATCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACCTTCAAT 62248 || || ||| |||| || || | ||| ||||| ||||| ||||| |||||||| Sbjct 1181435 GCTTCCAGCAGCATTTCACGGTTCATCACGTTGACGTTGAGGTGCTGACCCCCTTCAAT 1181493 Score = 96.9 bits (106), Expect = 4e-15 Identities = 284/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 142195 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACTAAT 142254 |||||||||||||| || | ||||| | || ||||| ||| || ||||| || | Sbjct 2806265 CCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGCACCAGC 2806206 Query 142255 AGGTTCTCTACTTCTAAGTGCCACATTGGATAATACGCTGTAGCAGCACCACCACGAATA 142314 ||| | || ||||| | ||||||||||| || || || || ||||| || || | Sbjct 2806205 AGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCGCGCACG 2806146 Query 142315 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCC 142374 || || ||||| || || || || || || ||||| || || |||| ||||| || || Sbjct 2806145 CCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAAT-GCAGCC 2806087 Query 142375 GTATGTCGAA--CTTCACCCATACCGATCTTAGAACCTTCTGCACGAAGCATACCAACGT 142432 | ||| ||| ||||||| | |||| || ||||| | ||| ||| Sbjct 2806086 G-GTGTGGAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGACCGGCGT 2806028 Query 142433 TGATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCT-GAAGTTTTGTTA 142491 | || |||||||| || || | ||||| || | | ||| | ||| || || |||| Sbjct 2806027 TAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCG-CGCTGGAGGTGGCGTTA 2805969 Query 142492 ATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGA 142551 || || | | || ||| ||||| | ||| || ||||||||| || || Sbjct 2805968 ATGGAATCAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGCGTCGGG 2805909 Query 142552 GTACGAGCACCTGCCATAATTGGGGTTGGCAATGAAA-CTTGATGAGTAGAAACGGCATC 142610 || || | || | ||||||||| || |||| |||| ||| | | || || | ||||| Sbjct 2805908 GTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAATCTTAAAG-GTGGAGATCGCATC 2805850 Query 142611 ATAAAAACG 142619 || ||||| Sbjct 2805849 GTAGAAACG 2805841 >seq83 Length=912621 Score = 167 bits (184), Expect = 3e-36 Identities = 318/467 (68%), Gaps = 1/467 (0%) Strand=Plus/Minus Query 142154 TTTTACCAAGGCGTTCCATCATGAGGTCATTAATCTGAATTCCGTAGTCCATATGTCGAA 142213 |||||||| | |||| |||||| | || || || | ||||| || | || || | Sbjct 580207 TTTTACCA-GACGTTGATACATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGA 580149 Query 142214 TACGGTTTTCATCCACGCCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGT 142273 |||||| | || || || |||||||||||| ||||||| | | || | ||| |||| Sbjct 580148 CACGGTTACCTTCAACACCACGGTTATTTTTCAGGACTAATAAGCTTTCAATTTCCAAGT 580089 Query 142274 GCCACATTGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATT 142333 ||||||| || ||| || ||| || ||||| || || | || ||||| || ||||||| Sbjct 580088 GCCACATAGGGTAAAACAGTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATT 580029 Query 142334 TTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCA 142393 | || || || ||||| ||||| |||| || ||| ||| ||||| | ||||||| Sbjct 580028 TCACGGCCGTCTGGAAGTGTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCAC 579969 Query 142394 TACCGATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTT 142453 || ||| ||| ||||||| ||| | ||||||||||| || || |||| Sbjct 579968 CACGGATTGGGCTGCCTAGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTT 579909 Query 142454 TAGAAATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGG 142513 |||| |||| || || | ||||| ||| ||||| | ||| ||| || Sbjct 579908 GTGAAACGTATTTAACGATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCAC 579849 Query 142514 CTTCAATAACTACACAACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTG 142573 || |||| || || ||| |||||||| || || || | || ||||| |||| Sbjct 579848 ACTCGATAAGCACGCATGAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTG 579789 Query 142574 GGGTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACGA 142620 | || || || |||| || | || || |||||||||||||| ||| Sbjct 579788 GCGTAGGTAAGGAAATTTTAAAGGTCGACACGGCATCATAAAAGCGA 579742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536022032889600