Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq83 159 4e-34 seq122 152 5e-32 >seq83 Length=912621 Score = 159 bits (176), Expect = 4e-34 Identities = 291/421 (69%), Gaps = 4/421 (1%) Strand=Plus/Minus Query 135785 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 135844 ||| || || || || |||||||||||||| || ||||| | |||||| |||| || || Sbjct 580189 CATGAGTTTGTTGATTTGTACGCCGTAATCTAGGTGACGGACACGGTTACCTTCAACACC 580130 Query 135845 CTTATTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGA 135903 || || || | || ||| || ||||||| || || |||||||| |||||| | | Sbjct 580129 ACGGTTATTTTTCAGGACTAATAAG-CTTTCAATTTCCAAGTGCCACATAGGGTAAAACA 580071 Query 135904 GAGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAAT 135963 | ||||| || || || || | |||||||| ||||| || || ||||| ||||| || | Sbjct 580070 GTGTCGCGGCACCCCCGCGTACGCCGCCTTGCGAGCAAGATTTCACGGCCGTCTGGAAGT 580011 Query 135964 GTTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGAT-CCT 136022 |||| |||| |||||| || ||||| | |||||||| | ||| | | | ||| Sbjct 580010 GTTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCACCACGGAT-TGGGCTGCCT 579952 Query 136023 TCCGCGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATG 136082 ||| ||||| ||||| ||||||||||| || || || | || || || | | Sbjct 579951 AGCGCACGAATACGGCCAGCATTGATACCGATCCCTGCGCGTTGTGAAACGTATTTAACG 579892 Query 136083 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACGCAC 136142 || ||| | | || ||||||| | || || ||| || || | |||||| Sbjct 579891 ATAGCACTAGAAGTGGCGTTGATAGAGTCTAAGCTATCGCCACACTCGATAAGCACGCAT 579832 Query 136143 GAACTAAATTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGATT 136202 || || ||||| || || || || || || || ||||| || || ||||| | || ||| Sbjct 579831 GAGCTGAATTGGCGAGTCGGCGTCCGTACCCCAGCCATGATTGGCGTAGGTAAGGAAATT 579772 Query 136203 T 136203 | Sbjct 579771 T 579771 >seq122 Length=4874392 Score = 152 bits (168), Expect = 5e-32 Identities = 315/464 (68%), Gaps = 6/464 (1%) Strand=Plus/Minus Query 135741 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135800 || || ||||||||||| | || | || || | |||| |||||| || || | | Sbjct 2806331 GGGCTGAACAGAGTAATCTCTTCACCCTTCAGCAGGCGCTGATACATCAGCTTGTTCAGC 2806272 Query 135801 TGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTTATTGTTCTTTAAC 135860 || |||||||| || | |||||| | |||||| |||| || || |||||||| | | Sbjct 2806271 TGCACGCCGTAGTCCATATGACGCACGCGGTTGCCTTCAACGCCGCGGTTGTTCTTCAGC 2806212 Query 135861 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135920 || | ||| ||||| | || | ||||||||||||||| | || ||||| || ||||| Sbjct 2806211 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAACAGGGTCGCTGCACCGCCG 2806152 Query 135921 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135980 || | ||||| || ||||| ||||| || || ||||| || || || |||| || || Sbjct 2806151 CGCACGCCGCCCTGAGAGCAGGACTTCACCGCGGTCTGGAAGTGCTTATAGAACGGAATG 2806092 Query 135981 ACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATAC 136038 ||| || || ||| ||||||| | |||| || ||| || || || Sbjct 2806091 CAGCCGGTGTG--GAATGCTTCACCGCCGCGGATCGGGCTGCCCAGCGCACGGATGCGAC 2806034 Query 136039 CAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATGATTGCATTTGCTGTTT 136098 | ||||| || ||||| || ||||||| || ||||| | || || | | || Sbjct 2806033 CGGCGTTAATGCCGATACCGGCACGCTGAGAAACGTACTTCACAATCGCGCTGGAGGTGG 2805974 Query 136099 CGTTGATGCCCTGCAATG-AGTCATCACTTTCAATCACCACGCACGAACTAAATTGTCGT 136157 |||| ||| | ||| | ||| | | ||||||| ||||| || || || || || Sbjct 2805973 CGTTAATGGAAT-CAAGGCTGTCGCCGCACTCAATCAGTACGCAGGAGCTGAACTGGCGC 2805915 Query 136158 GTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGAT 136201 || || || ||||| || | |||||| || || ||||| || || Sbjct 2805914 GTCGGGGTGCGCACGCCGGACATAATTGGCGTCGGCAGCGAAAT 2805871 Score = 122 bits (134), Expect = 9e-23 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 53628 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53687 ||| ||||||||||||| || |||||||||||||| ||||| |||| | || || || Sbjct 3215646 TTCAGTAAAGGTACGCGTAATCACGTCACGCTGCTGTTCTGGCGTCAAAGAGTTAAAACG 3215705 Query 53688 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53747 ||| || ||||| ||||||||||| || |||||||| || ||||| || || | || || Sbjct 3215706 CACGGCATAACCGGAAACGCGAATGGTCAGCTGCGGATATTTCTCCGGGTGCTTCACCGC 3215765 Query 53748 GTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTCAAC 53804 || || | |||| || || ||||| | |||| ||||||||| || || || Sbjct 3215766 CTCTTCCAGCGTTTCACGGCTCAGGACGTTGACGTTCAGATGCTGACCGCCCTCCAC 3215822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524688520231440