Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Frankliniella_20occidentalis_20[genbank_20GCA_5F000697945.1_202014- 06-04] 6,263 sequences; 415,781,860 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq122 145 1e-29 >seq122 Length=4874392 Score = 145 bits (160), Expect = 1e-29 Identities = 275/401 (69%), Gaps = 8/401 (2%) Strand=Plus/Plus Query 147148 TTTCGCTACCTACACCGATTATGGCAGGCGTTCGTACCCCGACACGTCAATTTAGCTCGT 147207 ||||||| || || || |||||| | ||||| || |||||||| || || || ||||| | Sbjct 2805872 TTTCGCTGCCGACGCCAATTATGTCCGGCGTGCGCACCCCGACGCGCCAGTTCAGCTCCT 2805931 Query 147208 GTGTGAAAATCGAATCTGGCGACTCGCTGCGTTCGATCAACAAGGTATCTGAAGCT--AT 147265 | || || || | |||||| || ||| || ||| | | || ||| || Sbjct 2805932 GCGTACTGATTGAGTGCGGCGACAGCCTTGATTCCATTAAC--GCCACCTCCAGCGCGAT 2805989 Query 147266 CGTTGATTACATTAGTAAACGTGCGGGTATTGGCGTAAACGGTGGTGCAATTCGAGCAGA 147325 || | ||| || | | ||||| ||||| ||| | |||| ||| || || || Sbjct 2805990 TGTGAAGTACGTTTCTCAGCGTGCCGGTATCGGCATTAACGCCGGTCGCATCCGTGCGCT 2806049 Query 147326 GGGTTCGGTTGTACGTGCGGGTGAA--ATTCGTCACACTGGCGTAATTCCTTTCTGGAAA 147383 ||| | || | |||||| |||| ||||| ||| ||||| |||| || Sbjct 2806050 GGGCAGCCCGATCCGCGGCGGTGAAGCATTC--CACACCGGCTGCATTCCGTTCTATAAG 2806107 Query 147384 CACTTTCAGACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGCGGTGCTGCGACT 147443 ||||| ||||| ||||| || || || ||||| || || || || |||||||| ||||| Sbjct 2806108 CACTTCCAGACCGCGGTGAAGTCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCAGCGACC 2806167 Query 147444 CTGACTTACCCGATCTGGCACTTAGAAGTAGAAAAGCTTCTTGTTCTGAAGAACAACAAA 147503 ||| ||||| || ||||| | ||||| |||| || || || |||||||||||| Sbjct 2806168 CTGTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGC 2806227 Query 147504 GGTGTTGAAGAGAACCGTATTCGTCATCTTGACTACAGCGT 147544 || ||||||| ||||| | |||||| | |||||| |||| Sbjct 2806228 GGCGTTGAAGGCAACCGCGTGCGTCATATGGACTACGGCGT 2806268 Score = 100 bits (110), Expect = 4e-16 Identities = 223/335 (67%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 8894 TGGAAAGAACTGACTGGCTACGGATTCAGTCTATACAGCACGCCAAGCGAATCGCTATGT 8953 ||||| || ||| | |||||| ||||| || ||||||||||| |||||| || || Sbjct 3821176 TGGAAGGAGGAGACCGACTACGGCTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGC 3821235 Query 8954 GATCGTTTCTGTCGTCTCGATCAAGAGAAATACGGTATCATTACGGGTATCAACGACAAA 9013 || || ||||| || ||||| | ||| || | | |||| ||| ||||||| Sbjct 3821236 GACCGCTTCTGCCGCCTCGACGCCGCCGAATTTGGCGTGGTGCCGGGCGTCACCGACAAA 3821295 Query 9014 GACTATTACACGAACTCGTTTCACTTAGATGTGTTCAAGAAAGTGAATCCGTTCGAGAAG 9073 | || ||||| ||| || ||| | || || || || || ||||||| ||| || Sbjct 3821296 GGTTACTACACCAACAGCTTCCACCTCGACGTTGAGAAAAAGGTTAATCCGTACGACAAA 3821355 Query 9074 ATTGATTTCGAAGCAGCATACCCAATTCATGCGAATGGTGGTTTCATCTGCTATGCTGAA 9133 || || || ||||| | || || || || || ||||| |||||||| | || Sbjct 3821356 ATCGACTTTGAAGCGGGCTATCCGCCGATCGCCAACGGCGGTTTTATCTGCTACGGCGAG 3821415 Query 9134 TTCCCGAACATGCGAGACAACATCAAAGGTCTAGAGCGCGTATGGGATTACGCATATAAG 9193 | |||||| || | | ||| | || | || ||| ||| ||||||||| || | Sbjct 3821416 TACCCGAATATCCAGCATAACCTGAAGGCACTGGAGGACGTCTGGGATTACAGCTACAGC 3821475 Query 9194 AAAGTTGCGTACTTCGGCACAAACACGCCGATTGA 9228 || | || | |||||| ||||| |||||||| Sbjct 3821476 CGCGTGCCCTATTACGGCACCAACACCCCGATTGA 3821510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783279474207120